Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 107798858 . A C CCDS43125.1:NM_198793.2:c.380aTc>aGc_NP_942088.1:p.127I>S Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7myz 1 Q08722,P0ABE7 99.35 3e-109 X-RAY
 2021-09-08 ILE A:109 C:109 1.0 0.006 E -130.5 122.8 1.0 0.006 0.0 NAG
NAG
 8.690
6.922
 CG2
C
 C8
C1
ILE B:109 D:109 3.0 0.017 E -129.3 123.3 NA NA NA
5tz2 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 ILE C:109 C:109 2.0 0.011 E -122.0 137.2 2.0 0.011 0.0 NAG
NAG
HOH
 6.752
8.580
3.348
 O
CG2
CG1
 C1
C8
O
5tzu 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 ILE C:109 C:109 1.0 0.006 E -132.3 132.7 1.0 0.006 0.0 NAG
NAG
NAG
ACT
HOH
 8.240
9.303
6.206
7.251
3.262
 CG2
CG2
C
CG2
CG1
 C8
O6
C1
OXT
O
5tzt 3 Q08722 98.37 2e-85 X-RAY
 2017-03-15 ILE E:109 C:109 22.0 NA E -143.3 154.8 NA NA NA
ILE F:109 D:109 25.0 NA E -139.1 157.4 25.0 NA NA
2jjs 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 ILE C:109 C:109 1.0 0.006 E -134.9 133.1 1.0 0.006 0.0 NAG
HOH
 8.302
3.386
 CG2
CG1
 C8
O
ILE D:109 D:109 0.0 0.0 E -136.0 129.7 NA NA NA
2jjt 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 ILE C:109 C:109 2.0 0.011 E -127.3 132.9 2.0 0.011 0.0 NAG
NAG
HOH
 7.929
6.612
6.803
 CG2
O
O
 C8
C1
O
ILE D:109 D:109 2.0 0.011 E -125.0 132.8 NA NA NA
2vsc 1 Q08722 93.55 1e-81 X-RAY
 2008-08-12 ILE A:109 A:109 139.0 0.794 -130.4 130.1 1.0 0.006 0.788 B:Q08722:0.789
 NAG
NAG
HOH
 8.014
6.811
3.232
 CG2
C
CG1
 C8
C1
O
ILE B:109 B:109 140.0 0.8 -129.7 131.3 1.0 0.006 0.794 A:Q08722:0.794
 NAG
NAG
HOH
 8.138
7.075
3.196
 CG2
O
CG1
 C8
C1
O
ILE C:109 C:109 154.0 0.88 -142.8 132.8 NA NA NA
ILE D:109 D:109 143.0 0.817 -128.6 131.2 NA NA NA
4cmm 2 Q08722 93.55 1e-81 X-RAY
 2014-02-26 ILE B:109 B:109 2.0 0.011 E -133.1 132.7 2.0 0.011 0.0 NAG
NAG
HOH
 8.075
6.496
3.317
 CG2
C
CG1
 C8
C1
O
4kjy 1 Q08722 98.29 4e-80 X-RAY
 2013-06-12 ILE A:109 A:109 1.0 0.006 E -129.6 128.6 1.0 0.006 0.0 SO4
NAG
HOH
 5.715
7.014
5.414
 N
C
N
 O1
C1
O
ILE C:109 C:109 1.0 0.006 E -138.5 129.2 NA NA NA
5iwl 2 Q08722 97.37 2e-77 X-RAY
 2016-06-29 ILE C:109 C:109 1.0 0.006 E -128.5 136.9 1.0 0.006 0.0 NAG
NAG
 8.299
6.696
 CG2
C
 C8
C1
ILE D:109 D:109 1.0 0.006 E -136.8 131.0 1.0 0.006 0.0 NAG
NAG
 8.568
6.615
 CG2
C
 C8
C1

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q08722-f1 1 Q08722 100.0 0.0 ILE A:127 A:127 1.0 0.006 E -122.5 129.4