Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 107798912 . G A CCDS43125.1:NM_198793.2:c.326aCa>aTa_NP_942088.1:p.109T>I Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7myz 1 Q08722,P0ABE7 99.35 3e-109 X-RAY
 2021-09-08 THR A:91 C:91 68.0 0.486 -95.3 124.7 68.0 0.486 0.0 NAG
 4.469
 O
 C8
THR B:91 D:91 69.0 0.493 -93.4 119.5 NA NA NA
5tz2 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 THR C:91 C:91 71.0 0.507 -88.4 140.5 71.0 0.507 0.0 NAG
NAG
HOH
 5.230
9.620
3.559
 O
CG2
OG1
 C8
C8
O
5tzu 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 THR C:91 C:91 64.0 0.457 -84.5 152.8 64.0 0.457 0.0 NAG
NAG
HOH
 9.228
6.207
2.872
 CG2
O
O
 C8
O7
O
5tzt 3 Q08722 98.37 2e-85 X-RAY
 2017-03-15 THR E:91 C:91 67.0 0.479 -126.7 129.2 NA NA NA
THR F:91 D:91 87.0 0.621 -125.6 129.4 87.0 0.621 0.0
2jjs 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 THR C:91 C:91 61.0 0.436 -78.1 153.5 61.0 0.436 0.0 NAG
IOD
HOH
 9.472
8.076
2.686
 CG2
O
OG1
 C8
I
O
THR D:91 D:91 61.0 0.436 -72.6 151.9 NA NA NA
2jjt 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 THR C:91 C:91 54.0 0.386 -79.8 156.0 54.0 0.386 0.0 NAG
NAG
HOH
 9.511
4.709
6.865
 CG2
O
O
 C8
C8
O
THR D:91 D:91 53.0 0.379 -80.3 154.7 NA NA NA
2vsc 1 Q08722 93.55 1e-81 X-RAY
 2008-08-12 THR A:91 A:91 90.0 0.643 -86.7 153.5 59.0 0.421 0.222 B:Q08722:0.221
 NAG
NAG
HOH
 9.491
4.941
3.970
 CG2
O
CB
 C8
C8
O
THR B:91 B:91 90.0 0.643 -84.3 148.5 59.0 0.421 0.222 A:Q08722:0.221
 NAG
NAG
HOH
 9.352
4.855
4.087
 CG2
O
C
 C8
C8
O
THR C:91 C:91 99.0 0.707 -99.6 153.4 NA NA NA
THR D:91 D:91 92.0 0.657 -76.0 156.3 NA NA NA
4cmm 2 Q08722 93.55 1e-81 X-RAY
 2014-02-26 THR B:91 B:91 53.0 0.379 -87.4 145.5 53.0 0.379 0.0 NAG
NAG
HOH
 9.315
6.226
2.642
 CG2
O
O
 C8
C8
O
4kjy 1 Q08722 98.29 4e-80 X-RAY
 2013-06-12 THR A:91 A:91 63.0 0.45 -105.8 127.9 63.0 0.45 0.0 NAG
HOH
 4.708
2.704
 O
N
 C8
O
THR C:91 C:91 56.0 0.4 -94.4 145.9 NA NA NA
5iwl 2 Q08722 97.37 2e-77 X-RAY
 2016-06-29 THR C:91 C:91 71.0 0.507 -107.6 134.3 71.0 0.507 0.0 NAG
 5.501
 O
 C8
THR D:91 D:91 72.0 0.514 -105.6 125.5 72.0 0.514 0.0 NAG
 5.136
 O
 C8

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q08722-f1 1 Q08722 100.0 0.0 THR A:109 A:109 62.0 0.443 -67.4 145.9