Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr3 | 107798934 | . | T | A | CCDS43125.1:NM_198793.2:c.304Aag>Tag_NP_942088.1:p.102K>* | Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 7myz | 1 | Q08722,P0ABE7 | 99.35 | 3e-109 |
X-RAY |
2021-09-08 | LYS | A:84 | C:84 | 32.0 | NA | H | -65.1 | -39.5 | 32.0 | NA | NA |
NAG |
9.145 |
CA |
C8 |
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| LYS | B:84 | D:84 | 31.0 | NA | H | -68.8 | -42.4 | NA | NA | NA | |||||||||||||
| 5tz2 | 3 | Q08722 | 98.39 | 1e-86 |
X-RAY |
2017-03-15 | LYS | C:84 | C:84 | 48.0 | NA | H | -60.8 | -30.8 | 48.0 | NA | NA |
NAG HOH |
8.921 7.584 |
CA O |
C8 O |
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| 5tzu | 3 | Q08722 | 98.39 | 1e-86 |
X-RAY |
2017-03-15 | LYS | C:84 | C:84 | 59.0 | 0.295 | H | -60.7 | -37.9 | 59.0 | 0.295 | 0.0 |
NAG GOL HOH |
7.795 2.827 3.212 |
CG N NZ |
C8 O3 O |
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| 5tzt | 3 | Q08722 | 98.37 | 2e-85 |
X-RAY |
2017-03-15 | LYS | E:84 | C:84 | 39.0 | NA | H | -56.0 | -29.4 | NA | NA | NA | ||||||
| LYS | F:84 | D:84 | 20.0 | NA | H | -54.3 | -27.1 | 20.0 | NA | NA |
NAG HOH |
9.707 8.381 |
N N |
C1 O |
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| 2jjs | 2 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2008-08-05 | LYS | C:84 | C:84 | 107.0 | 0.535 | H | -62.6 | -27.3 | 107.0 | 0.535 | 0.0 |
NAG HOH |
9.194 2.905 |
CA NZ |
O7 O |
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| LYS | D:84 | D:84 | 103.0 | 0.515 | H | -58.4 | -29.4 | NA | NA | NA | |||||||||||||
| 2jjt | 2 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2008-08-05 | LYS | C:84 | C:84 | 25.0 | NA | H | -62.6 | -33.3 | 25.0 | NA | NA |
NAG |
8.992 |
CA |
C8 |
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| LYS | D:84 | D:84 | 58.0 | 0.29 | H | -64.8 | -30.8 | NA | NA | NA | |||||||||||||
| 2vsc | 1 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2008-08-12 | LYS | A:84 | A:84 | 87.0 | 0.435 | H | -60.6 | -35.1 | 87.0 | 0.435 | 0.0 |
NAG HOH |
9.027 3.321 |
CA CG |
C8 O |
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| LYS | B:84 | B:84 | 101.0 | 0.505 | H | -57.6 | -34.7 | 101.0 | 0.505 | 0.0 |
NAG HOH |
9.155 3.255 |
N CB |
O7 O |
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| LYS | C:84 | C:84 | 38.0 | 0.19 | H | -62.0 | -25.1 | NA | NA | NA | |||||||||||||
| LYS | D:84 | D:84 | 98.0 | 0.49 | H | -53.8 | -32.8 | NA | NA | NA | |||||||||||||
| 4cmm | 2 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2014-02-26 | LYS | B:84 | B:84 | 100.0 | 0.5 | H | -59.4 | -35.4 | 100.0 | 0.5 | 0.0 |
NAG HOH |
9.022 2.975 |
N NZ |
O7 O |
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| 4kjy | 1 | Q08722 | 98.29 | 4e-80 |
X-RAY |
2013-06-12 | LYS | A:84 | A:84 | 44.0 | NA | H | -70.0 | -38.3 | 44.0 | NA | NA |
HOH |
4.918 |
N |
O |
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| LYS | C:84 | C:84 | 33.0 | NA | H | -60.9 | -39.1 | NA | NA | NA | |||||||||||||
| 5iwl | 2 | Q08722 | 97.37 | 2e-77 |
X-RAY |
2016-06-29 | LYS | C:84 | C:84 | 17.0 | NA | H | -63.7 | -32.0 | 17.0 | NA | NA |
NAG |
9.181 |
CA |
C8 |
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| LYS | D:84 | D:84 | 15.0 | NA | H | -62.0 | -36.3 | 15.0 | NA | NA |
NAG HOH |
9.186 8.863 |
CA C |
C8 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q08722-f1 | 1 | Q08722 | 100.0 | 0.0 | LYS | A:102 | A:102 | 62.0 | 0.31 | H | -53.3 | -36.8 | |