Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr3 | 107799026 | . | G | A | CCDS43125.1:NM_198793.2:c.212gCt>gTt_NP_942088.1:p.71A>V | Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
7myz | 1 | Q08722,P0ABE7 | 99.35 | 3e-109 |
X-RAY |
2021-09-08 | ALA | A:53 | C:53 | 68.0 | 0.591 | T | -61.1 | -36.9 | 21.0 | 0.183 | 0.408 |
C:None:0.409 E:None:0.061 |
NAG NAG |
8.106 8.537 |
O O |
C1 C6 |
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ALA | B:53 | D:53 | 65.0 | 0.565 | T | -62.9 | -44.3 | NA | NA | NA | |||||||||||||
5tz2 | 3 | Q08722 | 98.39 | 1e-86 |
X-RAY |
2017-03-15 | ALA | C:53 | C:53 | 79.0 | 0.687 | T | -67.2 | -32.0 | 22.0 | 0.191 | 0.496 |
B:None:0.478 A:None:0.122 |
NAG NAG HOH |
7.170 7.139 7.932 |
O O N |
O7 O6 O |
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5tzu | 3 | Q08722 | 98.39 | 1e-86 |
X-RAY |
2017-03-15 | ALA | C:53 | C:53 | 63.0 | 0.548 | T | -61.1 | -38.7 | 19.0 | 0.165 | 0.383 |
B:None:0.383 A:None:0.07 |
NAG NAG NAG ACT HOH |
6.361 6.919 4.615 6.460 3.125 |
O O O O O |
O6 C8 O7 OXT O |
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5tzt | 3 | Q08722 | 98.37 | 2e-85 |
X-RAY |
2017-03-15 | ALA | E:53 | C:53 | 83.0 | 0.722 | T | -71.4 | -25.5 | NA | NA | NA | ||||||
ALA | F:53 | D:53 | 79.0 | 0.687 | T | -71.7 | -24.9 | 79.0 | 0.687 | 0.0 |
HOH |
4.159 |
CB |
O |
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2jjs | 2 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2008-08-05 | ALA | C:53 | C:53 | 71.0 | 0.617 | G | -61.8 | -29.4 | 67.0 | 0.583 | 0.034 |
A:P78324:0.035 |
IOD IOD NAG IOD HOH |
8.600 4.507 7.266 6.284 3.072 |
CB CB O CB N |
I I C6 I O |
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ALA | D:53 | D:53 | 67.0 | 0.583 | T | -59.1 | -34.8 | NA | NA | NA | |||||||||||||
2jjt | 2 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2008-08-05 | ALA | C:53 | C:53 | 67.0 | 0.583 | T | -64.3 | -39.8 | 64.0 | 0.557 | 0.026 |
A:P78324:0.026 |
NAG |
8.065 |
O |
C8 |
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ALA | D:53 | D:53 | 67.0 | 0.583 | T | -64.9 | -40.3 | NA | NA | NA | |||||||||||||
2vsc | 1 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2008-08-12 | ALA | A:53 | A:53 | 55.0 | 0.478 | T | -61.3 | -38.4 | 55.0 | 0.478 | 0.0 |
NAG NAG HOH |
7.255 5.601 3.021 |
O O N |
C6 O7 O |
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ALA | B:53 | B:53 | 63.0 | 0.548 | T | -60.0 | -41.5 | 63.0 | 0.548 | 0.0 |
HOH |
3.117 |
N |
O |
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ALA | C:53 | C:53 | 56.0 | 0.487 | T | -63.5 | -37.8 | NA | NA | NA | |||||||||||||
ALA | D:53 | D:53 | 66.0 | 0.574 | T | -58.1 | -44.8 | NA | NA | NA | |||||||||||||
4cmm | 2 | Q08722 | 93.55 | 1e-81 |
X-RAY |
2014-02-26 | ALA | B:53 | B:53 | 69.0 | 0.6 | G | -63.9 | -32.1 | 64.0 | 0.557 | 0.043 |
A:P78324:0.043 |
NAG HOH |
7.193 2.969 |
O N |
O6 O |
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4kjy | 1 | Q08722 | 98.29 | 4e-80 |
X-RAY |
2013-06-12 | ALA | A:53 | A:53 | 69.0 | 0.6 | T | -61.6 | -37.7 | 64.0 | 0.557 | 0.043 |
B:None:0.043 |
NAG NAG HOH |
6.700 6.720 2.860 |
O O N |
C6 C8 O |
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ALA | C:53 | C:53 | 69.0 | 0.6 | T | -64.7 | -41.1 | NA | NA | NA | |||||||||||||
5iwl | 2 | Q08722 | 97.37 | 2e-77 |
X-RAY |
2016-06-29 | ALA | C:53 | C:53 | 69.0 | 0.6 | T | -68.3 | -34.8 | 61.0 | 0.53 | 0.07 |
B:None:0.07 |
NAG |
7.387 |
O |
O6 |
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ALA | D:53 | D:53 | 63.0 | 0.548 | T | -69.8 | -50.3 | 50.0 | 0.435 | 0.113 |
A:None:0.113 |
NAG |
6.801 |
O |
C6 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q08722-f1 | 1 | Q08722 | 100.0 | 0.0 | ALA | A:71 | A:71 | 76.0 | 0.661 | T | -66.8 | -35.3 |