Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 107799026 . G A CCDS43125.1:NM_198793.2:c.212gCt>gTt_NP_942088.1:p.71A>V Homo sapiens CD47 molecule (CD47), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
7myz 1 Q08722,P0ABE7 99.35 3e-109 X-RAY
 2021-09-08 ALA A:53 C:53 68.0 0.591 T -61.1 -36.9 21.0 0.183 0.408 C:None:0.409
E:None:0.061
 NAG
NAG
 8.106
8.537
 O
O
 C1
C6
ALA B:53 D:53 65.0 0.565 T -62.9 -44.3 NA NA NA
5tz2 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 ALA C:53 C:53 79.0 0.687 T -67.2 -32.0 22.0 0.191 0.496 B:None:0.478
A:None:0.122
 NAG
NAG
HOH
 7.170
7.139
7.932
 O
O
N
 O7
O6
O
5tzu 3 Q08722 98.39 1e-86 X-RAY
 2017-03-15 ALA C:53 C:53 63.0 0.548 T -61.1 -38.7 19.0 0.165 0.383 B:None:0.383
A:None:0.07
 NAG
NAG
NAG
ACT
HOH
 6.361
6.919
4.615
6.460
3.125
 O
O
O
O
O
 O6
C8
O7
OXT
O
5tzt 3 Q08722 98.37 2e-85 X-RAY
 2017-03-15 ALA E:53 C:53 83.0 0.722 T -71.4 -25.5 NA NA NA
ALA F:53 D:53 79.0 0.687 T -71.7 -24.9 79.0 0.687 0.0 HOH
 4.159
 CB
 O
2jjs 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 ALA C:53 C:53 71.0 0.617 G -61.8 -29.4 67.0 0.583 0.034 A:P78324:0.035
 IOD
IOD
NAG
IOD
HOH
 8.600
4.507
7.266
6.284
3.072
 CB
CB
O
CB
N
 I
I
C6
I
O
ALA D:53 D:53 67.0 0.583 T -59.1 -34.8 NA NA NA
2jjt 2 Q08722 93.55 1e-81 X-RAY
 2008-08-05 ALA C:53 C:53 67.0 0.583 T -64.3 -39.8 64.0 0.557 0.026 A:P78324:0.026
 NAG
 8.065
 O
 C8
ALA D:53 D:53 67.0 0.583 T -64.9 -40.3 NA NA NA
2vsc 1 Q08722 93.55 1e-81 X-RAY
 2008-08-12 ALA A:53 A:53 55.0 0.478 T -61.3 -38.4 55.0 0.478 0.0 NAG
NAG
HOH
 7.255
5.601
3.021
 O
O
N
 C6
O7
O
ALA B:53 B:53 63.0 0.548 T -60.0 -41.5 63.0 0.548 0.0 HOH
 3.117
 N
 O
ALA C:53 C:53 56.0 0.487 T -63.5 -37.8 NA NA NA
ALA D:53 D:53 66.0 0.574 T -58.1 -44.8 NA NA NA
4cmm 2 Q08722 93.55 1e-81 X-RAY
 2014-02-26 ALA B:53 B:53 69.0 0.6 G -63.9 -32.1 64.0 0.557 0.043 A:P78324:0.043
 NAG
HOH
 7.193
2.969
 O
N
 O6
O
4kjy 1 Q08722 98.29 4e-80 X-RAY
 2013-06-12 ALA A:53 A:53 69.0 0.6 T -61.6 -37.7 64.0 0.557 0.043 B:None:0.043
 NAG
NAG
HOH
 6.700
6.720
2.860
 O
O
N
 C6
C8
O
ALA C:53 C:53 69.0 0.6 T -64.7 -41.1 NA NA NA
5iwl 2 Q08722 97.37 2e-77 X-RAY
 2016-06-29 ALA C:53 C:53 69.0 0.6 T -68.3 -34.8 61.0 0.53 0.07 B:None:0.07
 NAG
 7.387
 O
 O6
ALA D:53 D:53 63.0 0.548 T -69.8 -50.3 50.0 0.435 0.113 A:None:0.113
 NAG
 6.801
 O
 C6

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q08722-f1 1 Q08722 100.0 0.0 ALA A:71 A:71 76.0 0.661 T -66.8 -35.3