Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr6 106740939 . A C CCDS5055.1:NM_004849.2:c.279agT>agG_NP_004840.1:p.93S>R Homo sapiens autophagy related 5 (ATG5), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5npv 1 Q9H1Y0 100.0 0.0 X-RAY
2017-10-11 SER A:100 A:93 100.0 0.87 S -71.6 -42.6 100.0 0.87 0.0
SER C:100 C:93 70.0 0.609 S -64.6 -48.2 NA NA NA
5npw 1 Q9H1Y0 100.0 0.0 X-RAY
2017-10-11 SER A:100 A:93 69.0 0.6 T -82.5 -13.1 69.0 0.6 0.0 HOH
8.074
C
O
SER C:100 C:93 89.0 0.774 T -81.6 -13.9 NA NA NA
SER E:100 E:93 63.0 0.548 T -80.5 -12.7 NA NA NA
SER G:100 G:93 70.0 0.609 T -81.4 -13.5 NA NA NA
4tq0 1 Q9H1Y0 100.0 0.0 X-RAY
2015-03-11 SER A:107 A:93 74.0 0.643 T -70.4 -25.3 74.0 0.643 0.0 HOH
3.576
N
O
SER C:107 C:93 71.0 0.617 T -76.6 -21.1 NA NA NA
SER E:107 E:93 82.0 0.713 T -85.9 -16.0 NA NA NA
4tq1 1 Q9H1Y0 100.0 0.0 X-RAY
2015-03-11 SER A:107 A:93 117.0 1.0 T -93.4 -5.6 117.0 1.0 0.0 HOH
3.511
CA
O
4gdk 2 Q9H1Y0 100.0 0.0 X-RAY
2012-12-05 SER B:93 B:93 83.0 0.722 T -89.6 -5.2 60.0 0.522 0.2 F:Q676U5:0.2
NA
HOH
8.157
3.139
C
N
NA
O
SER E:93 E:93 91.0 0.791 T -77.0 -33.0 81.0 0.704 0.087 C:Q676U5:0.087
NA
HOH
8.063
2.617
C
OG
NA
O
4gdl 2 Q9H1Y0 100.0 0.0 X-RAY
2012-12-05 SER B:93 B:93 79.0 0.687 T -99.6 25.5 79.0 0.687 0.0 NA
8.054
C
NA
4naw 2 Q9H1Y0 100.0 0.0 X-RAY
2013-11-06 SER B:93 B:93 98.0 0.852 T -87.5 -13.8 98.0 0.852 0.0 NA
HOH
8.213
3.077
C
HA
NA
O
SER F:93 F:93 89.0 0.774 T -89.7 -8.4 NA NA NA
SER J:93 J:93 101.0 0.878 T -84.2 -5.2 NA NA NA
SER N:93 N:93 87.0 0.757 T -82.8 -2.5 NA NA NA
5d7g 1 Q9H1Y0 99.64 0.0 X-RAY
2016-02-03 SER A:98 A:93 90.0 0.783 S -68.9 -20.9 73.0 0.635 0.148 D:Q676U5:0.148
SER C:98 C:93 87.0 0.757 S -72.0 -26.0 79.0 0.687 0.07 B:Q676U5:0.07
SER E:98 E:93 92.0 0.8 S -55.9 -51.2 NA NA NA
SER G:98 G:93 88.0 0.765 S -60.0 -44.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h1y0-f1 1 Q9H1Y0 100.0 0.0 SER A:93 A:93 88.0 0.765 T -91.2 -1.6