Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr6 | 106740939 | . | A | C | CCDS5055.1:NM_004849.2:c.279agT>agG_NP_004840.1:p.93S>R | Homo sapiens autophagy related 5 (ATG5), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5npv | 1 | Q9H1Y0 | 100.0 | 0.0 |
X-RAY |
2017-10-11 | SER | A:100 | A:93 | 100.0 | 0.87 | S | -71.6 | -42.6 | 100.0 | 0.87 | 0.0 | ||||||
SER | C:100 | C:93 | 70.0 | 0.609 | S | -64.6 | -48.2 | NA | NA | NA | |||||||||||||
5npw | 1 | Q9H1Y0 | 100.0 | 0.0 |
X-RAY |
2017-10-11 | SER | A:100 | A:93 | 69.0 | 0.6 | T | -82.5 | -13.1 | 69.0 | 0.6 | 0.0 |
HOH |
8.074 |
C |
O |
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SER | C:100 | C:93 | 89.0 | 0.774 | T | -81.6 | -13.9 | NA | NA | NA | |||||||||||||
SER | E:100 | E:93 | 63.0 | 0.548 | T | -80.5 | -12.7 | NA | NA | NA | |||||||||||||
SER | G:100 | G:93 | 70.0 | 0.609 | T | -81.4 | -13.5 | NA | NA | NA | |||||||||||||
4tq0 | 1 | Q9H1Y0 | 100.0 | 0.0 |
X-RAY |
2015-03-11 | SER | A:107 | A:93 | 74.0 | 0.643 | T | -70.4 | -25.3 | 74.0 | 0.643 | 0.0 |
HOH |
3.576 |
N |
O |
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SER | C:107 | C:93 | 71.0 | 0.617 | T | -76.6 | -21.1 | NA | NA | NA | |||||||||||||
SER | E:107 | E:93 | 82.0 | 0.713 | T | -85.9 | -16.0 | NA | NA | NA | |||||||||||||
4tq1 | 1 | Q9H1Y0 | 100.0 | 0.0 |
X-RAY |
2015-03-11 | SER | A:107 | A:93 | 117.0 | 1.0 | T | -93.4 | -5.6 | 117.0 | 1.0 | 0.0 |
HOH |
3.511 |
CA |
O |
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4gdk | 2 | Q9H1Y0 | 100.0 | 0.0 |
X-RAY |
2012-12-05 | SER | B:93 | B:93 | 83.0 | 0.722 | T | -89.6 | -5.2 | 60.0 | 0.522 | 0.2 |
F:Q676U5:0.2 |
NA HOH |
8.157 3.139 |
C N |
NA O |
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SER | E:93 | E:93 | 91.0 | 0.791 | T | -77.0 | -33.0 | 81.0 | 0.704 | 0.087 |
C:Q676U5:0.087 |
NA HOH |
8.063 2.617 |
C OG |
NA O |
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4gdl | 2 | Q9H1Y0 | 100.0 | 0.0 |
X-RAY |
2012-12-05 | SER | B:93 | B:93 | 79.0 | 0.687 | T | -99.6 | 25.5 | 79.0 | 0.687 | 0.0 |
NA |
8.054 |
C |
NA |
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4naw | 2 | Q9H1Y0 | 100.0 | 0.0 |
X-RAY |
2013-11-06 | SER | B:93 | B:93 | 98.0 | 0.852 | T | -87.5 | -13.8 | 98.0 | 0.852 | 0.0 |
NA HOH |
8.213 3.077 |
C HA |
NA O |
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SER | F:93 | F:93 | 89.0 | 0.774 | T | -89.7 | -8.4 | NA | NA | NA | |||||||||||||
SER | J:93 | J:93 | 101.0 | 0.878 | T | -84.2 | -5.2 | NA | NA | NA | |||||||||||||
SER | N:93 | N:93 | 87.0 | 0.757 | T | -82.8 | -2.5 | NA | NA | NA | |||||||||||||
5d7g | 1 | Q9H1Y0 | 99.64 | 0.0 |
X-RAY |
2016-02-03 | SER | A:98 | A:93 | 90.0 | 0.783 | S | -68.9 | -20.9 | 73.0 | 0.635 | 0.148 |
D:Q676U5:0.148 |
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SER | C:98 | C:93 | 87.0 | 0.757 | S | -72.0 | -26.0 | 79.0 | 0.687 | 0.07 |
B:Q676U5:0.07 |
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SER | E:98 | E:93 | 92.0 | 0.8 | S | -55.9 | -51.2 | NA | NA | NA | |||||||||||||
SER | G:98 | G:93 | 88.0 | 0.765 | S | -60.0 | -44.3 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q9h1y0-f1 | 1 | Q9H1Y0 | 100.0 | 0.0 | SER | A:93 | A:93 | 88.0 | 0.765 | T | -91.2 | -1.6 |