Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 104207057 . T A CCDS30782.1:NM_001008221.1:c.1451gTt>gAt_NP_001008222.1:p.484V>D Homo sapiens amylase, alpha 1A (salivary) (AMY1A), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1c8q 1 P04745 99.8 0.0 X-RAY
2001-06-13 VAL A:469 A:469 6.0 0.039 E -93.6 119.2 6.0 0.039 0.0 HOH
7.376
O
O
1mfv 1 P04745 99.8 0.0 X-RAY
2002-11-20 VAL A:469 A:469 7.0 0.045 E -96.0 121.3 7.0 0.045 0.0 HOH
4.339
C
O
1smd 1 P04745 99.8 0.0 X-RAY
1996-07-11 VAL A:469 A:469 7.0 0.045 E -95.4 126.8 7.0 0.045 0.0 HOH
3.646
O
O
1xv8 1 P04745 99.8 0.0 X-RAY
2005-10-11 VAL A:469 A:469 11.0 0.071 E -106.6 137.4 11.0 0.071 0.0 HOH
2.717
O
O
VAL B:469 B:469 10.0 0.065 E -106.7 137.4 10.0 0.065 0.0 HOH
2.717
O
O
1q4n 1 P04745 99.6 0.0 X-RAY
2004-03-16 VAL A:469 X:469 7.0 0.045 E -86.2 124.5 7.0 0.045 0.0 HOH
2.846
O
O
1z32 1 P04745 99.6 0.0 X-RAY
2005-05-31 VAL A:469 X:469 7.0 0.045 E -92.4 121.4 7.0 0.045 0.0 HOH
4.898
O
O
1jxj 1 P04745 99.6 0.0 X-RAY
2001-09-14 VAL A:469 A:469 6.0 0.039 E -95.9 122.6 6.0 0.039 0.0 HOH
2.679
O
O
1nm9 1 P04745 99.6 0.0 X-RAY
2004-01-20 VAL A:469 A:469 7.0 0.045 E -92.5 118.9 7.0 0.045 0.0 HOH
4.641
C
O
3blk 1 P04745 99.6 0.0 X-RAY
2008-11-25 VAL A:469 A:469 8.0 0.052 E -95.6 123.7 8.0 0.052 0.0 HOH
4.539
C
O
3blp 1 P04745 99.6 0.0 X-RAY
2008-11-18 VAL A:469 X:469 7.0 0.045 E -92.0 122.9 7.0 0.045 0.0 HOH
2.813
O
O
1jxk 1 P04745 98.79 0.0 X-RAY
2001-09-14 VAL A:464 A:464 7.0 0.045 E -92.8 125.8 7.0 0.045 0.0 HOH
2.636
O
O
1mfu 1 P04745 98.79 0.0 X-RAY
2002-11-20 VAL A:464 A:464 8.0 0.052 E -95.2 124.0 8.0 0.052 0.0 HOH
4.624
C
O
3dhp 1 P04745 98.59 0.0 X-RAY
2008-07-01 VAL A:469 A:469 7.0 0.045 E -94.2 125.4 7.0 0.045 0.0 HOH
2.856
O
O
3old 1 P04746 97.38 0.0 X-RAY
2011-04-13 VAL A:469 A:469 8.0 0.052 E -96.3 130.3 8.0 0.052 0.0 HOH
2.740
O
O
3ole 1 P04746 97.38 0.0 X-RAY
2011-04-13 VAL A:469 A:469 8.0 0.052 E -95.9 124.3 8.0 0.052 0.0 HOH
2.925
O
O
3olg 1 P04746 97.38 0.0 X-RAY
2011-04-13 VAL A:469 A:469 7.0 0.045 E -94.8 122.9 7.0 0.045 0.0 HOH
5.418
C
O
3oli 1 P04746 97.38 0.0 X-RAY
2011-04-13 VAL A:469 A:469 7.0 0.045 E -94.1 123.7 7.0 0.045 0.0 HOH
3.069
O
O
6z8l 1 P04746 97.18 0.0 X-RAY
2020-12-02 VAL A:469 A:469 8.0 0.052 E -93.7 126.8 8.0 0.052 0.0 HOH
2.925
O
O
1b2y 1 P04746 97.18 0.0 X-RAY
2000-02-16 VAL A:469 A:469 8.0 0.052 E -94.6 121.2 8.0 0.052 0.0 HOH
3.812
O
O
1bsi 1 P04746 96.98 0.0 X-RAY
1999-05-18 VAL A:469 A:469 8.0 0.052 E -95.4 127.5 8.0 0.052 0.0 HOH
5.003
N
O
1cpu 1 P04746 96.98 0.0 X-RAY
1999-06-14 VAL A:469 A:469 8.0 0.052 E -96.4 128.2 8.0 0.052 0.0 HOH
4.931
N
O
1hny 1 P04746 96.98 0.0 X-RAY
1996-03-08 VAL A:469 A:469 8.0 0.052 E -96.0 125.8 8.0 0.052 0.0 HOH
2.832
O
O
1u2y 1 P04746 96.98 0.0 X-RAY
2004-09-07 VAL A:469 A:469 8.0 0.052 E -100.7 127.8 8.0 0.052 0.0 HOH
4.286
CG1
O
1u30 1 P04746 96.98 0.0 X-RAY
2004-09-07 VAL A:469 A:469 10.0 0.065 E -99.6 131.0 10.0 0.065 0.0 HOH
4.980
N
O
1u33 1 P04746 96.98 0.0 X-RAY
2004-09-07 VAL A:469 A:469 8.0 0.052 E -93.0 125.7 8.0 0.052 0.0 HOH
2.955
O
O
1xcw 1 P04746 96.98 0.0 X-RAY
2004-12-07 VAL A:469 A:469 8.0 0.052 E -97.9 125.9 8.0 0.052 0.0 HOH
4.832
N
O
1xcx 1 P04746 96.98 0.0 X-RAY
2004-12-07 VAL A:469 A:469 8.0 0.052 E -99.1 128.0 8.0 0.052 0.0 HOH
5.025
N
O
1xd0 1 P04746 96.98 0.0 X-RAY
2004-12-07 VAL A:469 A:469 10.0 0.065 E -100.6 131.5 10.0 0.065 0.0 HOH
4.912
N
O
1xd1 1 P04746 96.98 0.0 X-RAY
2004-12-07 VAL A:469 A:469 8.0 0.052 E -99.1 128.8 8.0 0.052 0.0 HOH
4.956
N
O
2qmk 1 P04746 96.98 0.0 X-RAY
2008-03-25 VAL A:469 A:469 9.0 0.058 E -98.4 131.2 9.0 0.058 0.0 HOH
3.419
O
O
2qv4 1 P04746 96.98 0.0 X-RAY
2008-03-25 VAL A:469 A:469 8.0 0.052 E -96.7 128.5 8.0 0.052 0.0 HOH
3.117
O
O
3bai 1 P04746 96.98 0.0 X-RAY
2008-03-25 VAL A:469 A:469 8.0 0.052 E -101.9 129.1 8.0 0.052 0.0 HOH
3.185
O
O
3baj 1 P04746 96.98 0.0 X-RAY
2008-03-25 VAL A:469 A:469 8.0 0.052 E -102.0 127.3 8.0 0.052 0.0 HOH
3.179
O
O
3baw 1 P04746 96.98 0.0 X-RAY
2008-03-25 VAL A:469 A:469 8.0 0.052 E -93.1 131.0 8.0 0.052 0.0 HOH
2.807
O
O
3ij7 1 P04746 96.98 0.0 X-RAY
2009-10-27 VAL A:469 A:469 8.0 0.052 E -96.7 127.0 8.0 0.052 0.0 HOH
2.885
O
O
3ij8 1 P04746 96.98 0.0 X-RAY
2009-10-27 VAL A:469 A:469 8.0 0.052 E -95.5 125.3 8.0 0.052 0.0 HOH
4.257
CG1
O
3ij9 1 P04746 96.98 0.0 X-RAY
2009-10-27 VAL A:469 A:469 9.0 0.058 E -96.0 127.3 9.0 0.058 0.0 HOH
2.940
O
O
4gqq 1 P04746 96.98 0.0 X-RAY
2012-10-24 VAL A:469 A:469 8.0 0.052 E -99.9 133.9 8.0 0.052 0.0 HOH
3.166
O
O
4gqr 1 P04746 96.98 0.0 X-RAY
2012-10-24 VAL A:469 A:469 7.0 0.045 E -93.8 125.2 7.0 0.045 0.0 HOH
2.839
O
O
4w93 1 P04746 96.98 0.0 X-RAY
2015-07-15 VAL A:469 A:469 7.0 0.045 E -96.0 123.4 7.0 0.045 0.0 HOH
4.742
C
O
4x9y 1 P04746 96.98 0.0 X-RAY
2014-12-31 VAL A:469 A:469 8.0 0.052 E -98.3 127.2 8.0 0.052 0.0 HOH
2.851
O
O
5e0f 1 P04746 96.98 0.0 X-RAY
2016-09-07 VAL A:469 A:469 7.0 0.045 E -97.6 123.2 7.0 0.045 0.0 HOH
3.857
C
O
5emy 1 P04746 96.98 0.0 X-RAY
2016-07-06 VAL A:469 A:469 8.0 0.052 E -97.0 129.9 8.0 0.052 0.0 HOH
2.859
O
O
5kez 1 P04746 96.98 0.0 X-RAY
2017-03-29 VAL A:469 A:469 8.0 0.052 E -94.9 125.0 8.0 0.052 0.0 HOH
4.088
C
O
5u3a 1 P04746 96.98 0.0 X-RAY
2017-12-06 VAL A:469 A:469 8.0 0.052 E -97.2 125.4 8.0 0.052 0.0 HOH
2.833
O
O
5va9 1 P04746 96.98 0.0 X-RAY
2018-03-28 VAL A:469 A:469 9.0 0.058 E -94.5 130.8 9.0 0.058 0.0 HOH
4.057
C
O
VAL B:469 B:469 8.0 0.052 E -95.7 131.0 NA NA NA
6obx 1 P04746 96.98 0.0 X-RAY
2020-02-12 VAL A:469 A:469 8.0 0.052 E -98.8 129.6 8.0 0.052 0.0 HOH
2.835
O
O
6ocn 1 P04746 96.98 0.0 X-RAY
2020-02-12 VAL A:469 A:469 8.0 0.052 E -98.5 128.5 8.0 0.052 0.0 HOH
2.815
O
O
1kgw 1 P04746 96.77 0.0 X-RAY
2002-01-16 VAL A:469 A:469 10.0 0.065 E -96.1 128.0 10.0 0.065 0.0 HOH
4.688
C
O
1xgz 1 P04746 96.77 0.0 X-RAY
2005-05-24 VAL A:469 A:469 7.0 0.045 E -103.5 125.9 7.0 0.045 0.0 HOH
3.037
O
O
1xh0 1 P04746 96.77 0.0 X-RAY
2005-05-24 VAL A:469 A:469 7.0 0.045 E -99.8 125.6 7.0 0.045 0.0 HOH
3.228
O
O
1xh1 1 P04746 96.77 0.0 X-RAY
2005-05-24 VAL A:469 A:469 7.0 0.045 E -97.7 123.8 7.0 0.045 0.0 HOH
3.408
O
O
1xh2 1 P04746 96.77 0.0 X-RAY
2005-05-24 VAL A:469 A:469 8.0 0.052 E -103.2 126.5 8.0 0.052 0.0 HOH
2.973
O
O
3bak 1 P04746 96.77 0.0 X-RAY
2008-03-25 VAL A:469 A:469 9.0 0.058 E -99.0 129.6 9.0 0.058 0.0 HOH
4.843
CG1
O
3bax 1 P04746 96.77 0.0 X-RAY
2008-03-25 VAL A:469 A:469 8.0 0.052 E -97.3 128.1 8.0 0.052 0.0 HOH
2.968
O
O
3bay 1 P04746 96.77 0.0 X-RAY
2008-03-25 VAL A:469 A:469 10.0 0.065 E -102.7 127.3 10.0 0.065 0.0 HOH
5.177
N
O
1kgx 1 P04746 96.77 0.0 X-RAY
2002-01-16 VAL A:469 A:469 10.0 0.065 E -95.6 132.7 10.0 0.065 0.0 HOH
2.808
CG2
O
2cpu 1 P04746 96.77 0.0 X-RAY
2001-06-30 VAL A:469 A:469 11.0 0.071 E -92.9 134.2 11.0 0.071 0.0 HOH
4.979
N
O
3cpu 1 P04746 96.77 0.0 X-RAY
2001-06-30 VAL A:469 A:469 7.0 0.045 E -98.1 123.0 7.0 0.045 0.0 HOH
4.851
N
O
5td4 1 P04746 96.77 0.0 X-RAY
2016-11-02 VAL A:469 A:469 9.0 0.058 E -94.7 128.6 9.0 0.058 0.0 HOH
4.527
O
O
1kgu 1 P04746 96.77 0.0 X-RAY
2002-01-16 VAL A:469 A:469 8.0 0.052 E -94.7 125.2 8.0 0.052 0.0 HOH
3.075
O
O
1kb3 1 P04746 96.77 0.0 X-RAY
2002-05-01 VAL A:469 A:469 8.0 0.052 E -97.1 129.6 8.0 0.052 0.0 HOH
3.073
O
O
1kbb 1 P04746 96.77 0.0 X-RAY
2002-04-10 VAL A:469 A:469 8.0 0.052 E -99.9 119.2 8.0 0.052 0.0 HOH
5.175
N
O
1kbk 1 P04746 96.77 0.0 X-RAY
2002-04-10 VAL A:469 A:469 10.0 0.065 E -102.3 129.7 10.0 0.065 0.0 HOH
4.978
N
O
1kxq 1 P00690 86.29 0.0 X-RAY
2002-06-19 VAL A:469 A:469 0.0 0.0 E -95.3 124.2 0.0 0.0 0.0 HOH
4.764
N
O
VAL B:469 B:469 1.0 0.006 E -97.7 129.9 NA NA NA
VAL C:469 C:469 2.0 0.013 E -100.7 126.0 NA NA NA
VAL D:469 D:469 9.0 0.058 E -94.5 126.1 NA NA NA
1kxt 1 P00690 86.29 0.0 X-RAY
2002-06-19 VAL A:469 A:469 3.0 0.019 E -96.0 125.0 3.0 0.019 0.0 HOH
4.440
O
O
VAL C:469 C:469 0.0 0.0 E -106.9 112.1 NA NA NA
VAL E:469 E:469 0.0 0.0 E -95.6 126.8 NA NA NA
1kxv 1 P00690 86.29 0.0 X-RAY
2002-06-19 VAL A:469 A:469 0.0 0.0 E -95.6 129.1 0.0 0.0 0.0 HOH
3.981
C
O
VAL B:469 B:469 9.0 0.058 E -97.0 125.2 NA NA NA
1dhk 1 P00690 86.29 0.0 X-RAY
1997-12-24 VAL A:469 A:469 7.0 0.045 E -99.0 119.9 7.0 0.045 0.0 HOH
3.980
N
H2
1ppi 1 P00690 86.29 0.0 X-RAY
1995-05-24 VAL A:469 A:469 0.0 0.0 E -109.0 138.0 0.0 0.0 0.0 HOH
2.978
O
O
1vah 1 P00690 86.09 0.0 X-RAY
2005-04-26 VAL A:469 A:469 0.0 0.0 E -108.9 124.1 0.0 0.0 0.0 HOH
7.237
N
O
3l2l 1 P00690 86.09 0.0 X-RAY
2010-04-14 VAL A:469 A:469 0.0 0.0 E -100.9 126.6 0.0 0.0 0.0 HOH
2.655
O
O
3l2m 1 P00690 86.09 0.0 X-RAY
2010-04-14 VAL A:469 A:469 0.0 0.0 E -101.6 128.1 0.0 0.0 0.0 HOH
2.804
O
O
1ua3 1 P00690 86.09 0.0 X-RAY
2003-10-14 VAL A:469 A:469 0.0 0.0 E -100.5 128.2 0.0 0.0 0.0 EDO
EDO
HOH
5.612
7.119
2.790
N
N
O
O1
O2
O
1ose 1 P00690 85.89 0.0 X-RAY
1997-04-01 VAL A:469 A:469 0.0 0.0 E -104.6 126.9 0.0 0.0 0.0 HOH
2.747
O
O
1jfh 1 P00690 86.09 0.0 X-RAY
1998-12-02 VAL A:469 A:469 0.0 0.0 E -101.7 116.2 0.0 0.0 0.0 HOH
3.187
O
O
1hx0 1 P00690 85.89 0.0 X-RAY
2001-08-08 VAL A:469 A:469 0.0 0.0 E -96.3 124.8 0.0 0.0 0.0 EDO
EDO
HOH
7.075
5.697
2.761
N
N
O
O2
O1
O
1wo2 1 P00690 85.89 0.0 X-RAY
2005-03-15 VAL A:469 A:469 0.0 0.0 E -97.1 125.0 0.0 0.0 0.0 EDO
EDO
HOH
5.703
7.111
2.680
N
N
O
O1
O2
O
1pif 1 P00690 85.69 0.0 X-RAY
1996-12-07 VAL A:469 A:469 1.0 0.006 E -106.7 124.6 1.0 0.006 0.0 HOH
5.754
CG1
O
1pig 1 P00690 85.69 0.0 X-RAY
1996-12-07 VAL A:469 A:469 0.0 0.0 E -104.9 128.5 0.0 0.0 0.0 BGC
HOH
4.531
3.031
C
O
O3
O
4x0n 1 P00690 85.69 0.0 X-RAY
2015-11-25 VAL A:469 A:469 1.0 0.006 E -98.0 123.0 1.0 0.006 0.0 HOH
4.566
N
O
1bvn 1 P00690 85.48 0.0 X-RAY
1998-09-23 VAL A:469 P:469 8.0 0.052 E -92.4 116.3 8.0 0.052 0.0 HOH
5.333
N
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p0dte7-f1 1 P0DTE7 100.0 0.0 VAL A:484 A:484 8.0 0.052 E -93.1 122.1
af-p0dte8-f1 1 P0DTE8 100.0 0.0 VAL A:484 A:484 8.0 0.052 E -93.3 121.9
af-p0dub6-f1 1 P0DUB6 100.0 0.0 VAL A:484 A:484 8.0 0.052 E -91.4 123.7
af-p19961-f1 1 P19961 97.46 0.0 VAL A:484 A:484 8.0 0.052 E -92.8 121.8
af-p04746-f1 1 P04746 96.87 0.0 VAL A:484 A:484 8.0 0.052 E -96.7 123.0