Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 109441516 . A C CCDS792.2:NM_013296.4:c.697Aaa>Caa_NP_037428.3:p.233K>Q Homo sapiens G-protein signaling modulator 2 (GPSM2), transcript variant 3, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3sf4 1 P81274 100.0 0.0 X-RAY
 2011-11-23 LYS A:218 A:226 95.0 0.475 H -64.3 -42.5 95.0 0.475 0.0 HOH
 4.136
 CB
 O
LYS B:218 B:226 96.0 0.48 H -62.1 -37.6 NA NA NA
LYS C:218 C:226 89.0 0.445 H -53.1 -49.2 NA NA NA
4wnd 1 P81274 100.0 0.0 X-RAY
 2015-09-16 LYS A:218 A:226 110.0 0.55 H -66.9 -40.7 110.0 0.55 0.0 EDO
HOH
 8.391
2.734
 NZ
CE
 C2
O
4wne 1 P81274 100.0 0.0 X-RAY
 2015-09-16 LYS A:218 A:226 107.0 0.535 H -62.9 -39.4 107.0 0.535 0.0 HOH
 2.719
 NZ
 O
4wnf 1 P81274 100.0 0.0 X-RAY
 2015-09-16 LYS A:218 A:226 57.0 NA H -58.3 -41.7 57.0 NA NA
4wng 1 P81274 100.0 0.0 X-RAY
 2015-09-16 LYS A:219 A:226 105.0 0.525 H -66.6 -40.9 105.0 0.525 0.0 HOH
 2.897
 NZ
 O
6hc2 1 P81274 100.0 0.0 X-RAY
 2019-05-29 LYS A:226 A:226 150.0 0.75 H -63.3 -41.0 150.0 0.75 0.0
LYS C:226 C:226 101.0 0.505 H -63.5 -40.7 101.0 0.505 0.0
LYS E:226 E:226 95.0 0.475 H -63.9 -40.2 95.0 0.475 0.0
LYS G:226 G:226 97.0 0.485 H -64.2 -39.9 NA NA NA
LYS I:226 I:226 95.0 0.475 H -63.6 -40.8 NA NA NA
LYS K:226 K:226 103.0 0.515 H -63.4 -41.0 NA NA NA
LYS M:226 M:226 113.0 0.565 H -62.7 -41.3 NA NA NA
LYS O:226 O:226 154.0 0.77 H -63.1 -41.2 NA NA NA
LYS Q:226 Q:226 100.0 0.5 H -62.8 -41.6 NA NA NA
LYS S:226 S:226 113.0 0.565 H -63.1 -41.0 NA NA NA
LYS U:226 U:226 95.0 0.475 H -63.9 -40.4 NA NA NA
LYS W:226 W:226 94.0 0.47 H -63.2 -41.1 NA NA NA
5a6c 1 P81274,P55196 99.7 0.0 X-RAY
 2015-12-30 LYS A:212 A:226 117.0 0.585 H -63.8 -36.0 NA NA NA
LYS B:212 B:226 119.0 0.595 H -78.0 -47.1 119.0 0.595 0.0
3ro2 1 Q8VDU0 98.51 0.0 X-RAY
 2012-03-07 LYS A:214 A:226 115.0 0.575 H -63.1 -36.0 115.0 0.575 0.0 HOH
 3.001
 O
 O
4g2v 1 Q8VDU0 98.51 0.0 X-RAY
 2013-01-23 LYS A:216 A:226 106.0 0.53 H -63.2 -39.7 106.0 0.53 0.0 GOL
HOH
 6.247
2.982
 N
NZ
 C1
O
4jhr 1 Q8VDU0 98.09 0.0 X-RAY
 2013-06-05 LYS A:142 A:226 68.0 NA H -71.5 -41.9 68.0 NA NA
LYS B:142 B:226 52.0 NA H -71.1 -44.0 52.0 NA NA
3ro3 1 Q8VDU0 98.15 9e-110 X-RAY
 2012-03-07 LYS A:40 A:226 104.0 0.52 H -67.2 -41.4 104.0 0.52 0.0 GOL
CL
HOH
 6.429
3.218
2.634
 N
NZ
NZ
 O3
CL
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p81274-f1 1 P81274 100.0 0.0 LYS A:233 A:233 99.0 0.495 H -75.8 -37.8