Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110946636 . C A CCDS824.1:NM_006402.2:c.366gaG>gaT_NP_006393.2:p.122E>D Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 (LAMTOR5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6b9x 5 A0A0C4DGV4 100.0 8e-127 X-RAY
 2017-11-08 GLU E:122 E:122 157.0 0.826 G -64.8 -15.8 90.0 0.474 0.352 D:Q0VGL1:0.016
C:Q9UHA4:0.342
 HOH
 2.660
 O
 O
6nzd 5 A0A0C4DGV4 100.0 8e-127 EM
 2019-11-06 GLU E:122 E:122 157.0 0.826 G -64.8 -15.9 90.0 0.474 0.352 D:Q0VGL1:0.011
C:Q9UHA4:0.342
6wj2 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 GLU E:122 E:122 154.0 0.811 T -95.6 7.7 112.0 0.589 0.222 C:Q9UHA4:0.221
6wj3 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 GLU E:122 E:122 140.0 0.737 S -105.4 0.0 76.0 0.4 0.337 D:Q0VGL1:0.026
C:Q9UHA4:0.305
5y3a 5 O43504 98.91 1e-61 X-RAY
 2017-12-27 GLU E:42 E:122 147.0 0.774 G -89.2 26.5 74.0 0.389 0.385 D:Q0VGL1:0.142
C:Q9UHA4:0.279
 HOH
 3.534
 O
 O
GLU J:42 J:122 159.0 0.837 G -64.6 -38.0 NA NA NA
5vok 1 O43504 100.0 2e-61 X-RAY
 2018-05-23 GLU A:40 A:40 133.0 0.7 H -50.3 -42.8 113.0 0.595 0.105 B:Q0VGL1:0.105
GLU C:40 C:40 127.0 0.668 T -63.0 -41.0 NA NA NA
GLU E:40 E:40 153.0 0.805 T -67.3 -38.7 NA NA NA
GLU G:40 G:40 126.0 0.663 H -53.4 -44.3 NA NA NA
5x6u 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 GLU C:40 C:40 158.0 0.832 G -71.3 -18.8 119.0 0.626 0.206 A:Q9UHA4:0.205
 HOH
 2.769
 OE2
 O
5x6v 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 GLU C:40 C:40 155.0 0.816 G -65.9 -18.9 95.0 0.5 0.316 A:Q9UHA4:0.237
D:Q0VGL1:0.079
 HOH
 2.760
 O
 O
5y38 1 O43504 100.0 2e-61 X-RAY
 2017-12-06 GLU A:40 A:122 153.0 0.805 H -46.3 -37.4 149.0 0.784 0.021 B:Q0VGL1:0.021
 HOH
 2.701
 O
 O
5yk3 8 O43504 100.0 2e-61 X-RAY
 2019-01-23 GLU H:40 E:40 143.0 0.753 G -60.5 -27.4 NA NA NA
GLU M:40 J:40 162.0 0.853 H -51.1 -27.3 NA NA NA
6ehp 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 GLU C:40 C:40 156.0 0.821 G -59.8 -27.3 122.0 0.642 0.179 A:Q9UHA4:0.179
 HOH
 2.657
 O
 O
6ehr 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 GLU C:40 C:40 154.0 0.811 G -68.3 -20.4 71.0 0.374 0.437 A:Q9UHA4:0.226
D:Q0VGL1:0.216
6u62 8 O43504 100.0 2e-61 EM
 2019-10-30 GLU H:40 H:40 92.0 NA G -51.3 -41.9 74.0 NA NA F:Q9UHA4:NA
6ulg 4 O43504 100.0 2e-61 EM
 2019-11-20 GLU D:40 C:40 140.0 0.737 G -76.2 -11.0 125.0 0.658 0.079 B:Q9UHA4:0.063
E:Q0VGL1:0.016
3ms6 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 GLU A:40 A:40 146.0 0.768 H -60.9 -24.1 146.0 0.768 0.0 IPA
GOL
HOH
 6.112
8.597
2.376
 OE2
OE2
O
 C1
O3
O
3msh 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 GLU A:40 A:40 152.0 0.8 G -67.4 -14.9 152.0 0.8 0.0 IPA
PO4
HOH
 9.724
7.208
2.546
 N
CD
OE1
 C1
O4
O
5y39 5 O43504 100.0 6e-61 X-RAY
 2017-12-06 GLU E:40 E:122 159.0 0.837 G -62.4 1.5 112.0 0.589 0.248 D:Q0VGL1:0.047
C:Q9UHA4:0.195
 HOH
 7.011
 N
 O
GLU J:40 J:122 132.0 0.695 T -91.2 -13.8 NA NA NA
5yk3 3 O43504 100.0 6e-61 X-RAY
 2019-01-23 GLU C:40 o:40 148.0 0.779 G -56.9 -38.0 80.0 0.421 0.358 A:Q9UHA4:0.284
D:Q0VGL1:0.084
5yk5 2 O43504 100.0 2e-59 X-RAY
 2018-12-12 GLU B:39 B:40 135.0 0.711 H -68.3 -14.3 124.0 0.653 0.058 A:Q0VGL1:0.058
 HOH
 9.667
 CG
 O
5yk5 4 O43504 100.0 7e-58 X-RAY
 2018-12-12 GLU D:37 D:40 140.0 0.737 H -63.7 -4.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43504-f1 1 O43504 100.0 7e-62 GLU A:40 A:40 149.0 0.784 H -63.8 -21.4