Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110946647 . G A CCDS824.1:NM_006402.2:c.355Ctg>Ttg_NP_006393.2:p.119L>L Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 (LAMTOR5), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6b9x 5 A0A0C4DGV4 100.0 8e-127 X-RAY
 2017-11-08 LEU E:119 E:119 9.0 0.053 -102.6 128.2 1.0 0.006 0.047 D:Q0VGL1:0.047
 HOH
 2.678
 O
 O
6nzd 5 A0A0C4DGV4 100.0 8e-127 EM
 2019-11-06 LEU E:119 E:119 8.0 0.047 -102.5 128.2 1.0 0.006 0.041 D:Q0VGL1:0.041
6wj2 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 LEU E:119 E:119 26.0 0.153 -69.8 131.7 10.0 0.059 0.094 D:Q0VGL1:0.094
6wj3 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 LEU E:119 E:119 18.0 0.106 S -67.6 134.9 12.0 0.071 0.035 D:Q0VGL1:0.035
5y3a 5 O43504 98.91 1e-61 X-RAY
 2017-12-27 LEU E:39 E:119 11.0 0.065 -114.4 137.1 2.0 0.012 0.053 D:Q0VGL1:0.053
 HOH
 9.854
 CD2
 O
LEU J:39 J:119 9.0 0.053 -94.4 128.9 NA NA NA
5vok 1 O43504 100.0 2e-61 X-RAY
 2018-05-23 LEU A:37 A:37 10.0 0.059 -82.3 150.9 5.0 0.029 0.03 B:Q0VGL1:0.029
LEU C:37 C:37 18.0 0.106 -95.7 155.0 NA NA NA
LEU E:37 E:37 5.0 0.029 -67.1 125.9 NA NA NA
LEU G:37 G:37 10.0 0.059 -71.2 153.2 NA NA NA
5x6u 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 LEU C:37 C:37 4.0 0.024 -107.2 118.1 4.0 0.024 0.0 HOH
 5.267
 O
 O
5x6v 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 LEU C:37 C:37 6.0 0.035 -101.5 119.8 1.0 0.006 0.029 D:Q0VGL1:0.029
 HOH
 2.735
 O
 O
5y38 1 O43504 100.0 2e-61 X-RAY
 2017-12-06 LEU A:37 A:119 8.0 0.047 -97.1 139.4 1.0 0.006 0.041 B:Q0VGL1:0.041
 HOH
 9.085
 CD2
 O
5yk3 8 O43504 100.0 2e-61 X-RAY
 2019-01-23 LEU H:37 E:37 10.0 0.059 -79.4 128.9 NA NA NA
LEU M:37 J:37 7.0 0.041 -84.8 133.5 NA NA NA
6ehp 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 LEU C:37 C:37 5.0 0.029 -108.8 132.2 5.0 0.029 0.0 HOH
 2.688
 O
 O
6ehr 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 LEU C:37 C:37 4.0 0.024 -119.3 123.5 1.0 0.006 0.018 D:Q0VGL1:0.018
6u62 8 O43504 100.0 2e-61 EM
 2019-10-30 LEU H:37 H:37 8.0 0.047 -64.3 151.9 1.0 0.006 0.041 G:Q0VGL1:0.041
6ulg 4 O43504 100.0 2e-61 EM
 2019-11-20 LEU D:37 C:37 18.0 0.106 -115.8 131.7 3.0 0.018 0.088 E:Q0VGL1:0.088
3ms6 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 LEU A:37 A:37 6.0 0.035 -98.6 120.7 5.0 0.029 0.006 A:O43504:0.006
 IPA
GOL
HOH
 4.174
6.813
2.726
 CD2
N
O
 C3
O3
O
3msh 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 LEU A:37 A:37 8.0 0.047 -100.1 125.5 6.0 0.035 0.012 A:O43504:0.012
 GOL
IPA
IPA
PO4
HOH
 9.806
7.102
6.985
3.859
2.706
 N
O
CD2
CD2
O
 C1
C1
C1
O1
O
5y39 5 O43504 100.0 6e-61 X-RAY
 2017-12-06 LEU E:37 E:119 9.0 0.053 -101.5 136.2 1.0 0.006 0.047 D:Q0VGL1:0.047
 HOH
 5.649
 O
 O
LEU J:37 J:119 9.0 0.053 -78.3 127.0 NA NA NA
5yk3 3 O43504 100.0 6e-61 X-RAY
 2019-01-23 LEU C:37 o:37 10.0 0.059 -94.3 136.1 6.0 0.035 0.024 D:Q0VGL1:0.024
5yk5 2 O43504 100.0 2e-59 X-RAY
 2018-12-12 LEU B:36 B:37 7.0 0.041 -105.6 129.1 0.0 0.0 0.041 A:Q0VGL1:0.041
 HOH
 8.281
 CD2
 O
5yk5 4 O43504 100.0 7e-58 X-RAY
 2018-12-12 LEU D:34 D:37 6.0 0.035 -99.7 123.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43504-f1 1 O43504 100.0 7e-62 LEU A:37 A:37 6.0 0.035 -99.1 132.9