Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110950233 . T A CCDS824.1:NM_006402.2:c.256Acc>Tcc_NP_006393.2:p.86T>S Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 (LAMTOR5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6b9x 5 A0A0C4DGV4 100.0 8e-127 X-RAY
 2017-11-08 THR E:86 E:86 122.0 0.871 H -66.2 -42.6 72.0 0.514 0.357 A:Q6IAA8:0.357
 HOH
 2.796
 O
 O
6nzd 5 A0A0C4DGV4 100.0 8e-127 EM
 2019-11-06 THR E:86 E:86 123.0 0.879 H -66.2 -42.7 73.0 0.521 0.358 A:Q6IAA8:0.357
6wj2 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 THR E:86 E:86 120.0 0.857 H -64.8 -45.9 38.0 0.271 0.586 A:Q6IAA8:0.586
6wj3 5 A0A0C4DGV4 100.0 8e-127 EM
 2020-09-02 THR E:86 E:86 123.0 0.879 H -66.9 -47.9 40.0 0.286 0.593 A:Q6IAA8:0.593
5y3a 5 O43504 98.91 1e-61 X-RAY
 2017-12-27 THR E:6 E:86 121.0 0.864 H -79.3 -46.2 66.0 0.471 0.393 A:Q6IAA8:0.393
THR J:6 J:86 119.0 0.85 H -70.6 -45.2 NA NA NA
5vok 1 O43504 100.0 2e-61 X-RAY
 2018-05-23 THR A:4 A:4 87.0 0.621 -53.4 157.7 87.0 0.621 0.0
THR C:4 C:4 84.0 0.6 -58.0 147.4 NA NA NA
THR E:4 E:4 93.0 0.664 -123.7 -172.5 NA NA NA
THR G:4 G:4 73.0 0.521 48.4 70.0 NA NA NA
5x6u 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 THR C:4 C:4 121.0 0.864 H -70.5 -40.1 68.0 0.486 0.378 E:Q6IAA8:0.379
 HOH
 2.721
 OG1
 O
5x6v 3 O43504 100.0 2e-61 X-RAY
 2017-12-06 THR C:4 C:4 95.0 0.679 H -68.9 -48.0 49.0 0.35 0.329 E:Q6IAA8:0.329
 HOH
 3.025
 OG1
 O
5y38 1 O43504 100.0 2e-61 X-RAY
 2017-12-06 THR A:4 NA:NA DO NA DO DO DO NA NA NA
5yk3 8 O43504 100.0 2e-61 X-RAY
 2019-01-23 THR H:4 E:4 121.0 0.864 H -66.8 -39.8 NA NA NA
THR M:4 J:4 118.0 0.843 H -72.1 -45.6 NA NA NA
6ehp 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 THR C:4 C:4 123.0 0.879 H -65.3 -40.6 69.0 0.493 0.386 E:Q6IAA8:0.386
 HOH
 2.773
 O
 O
6ehr 3 O43504 100.0 2e-61 X-RAY
 2017-10-04 THR C:4 C:4 100.0 0.714 H -67.6 -45.0 47.0 0.336 0.378 E:Q6IAA8:0.379
6u62 8 O43504 100.0 2e-61 EM
 2019-10-30 THR H:4 H:4 114.0 0.814 T -85.2 -48.2 48.0 0.343 0.471 D:Q6IAA8:0.471
6ulg 4 O43504 100.0 2e-61 EM
 2019-11-20 THR D:4 C:4 114.0 0.814 H -68.9 -33.4 50.0 0.357 0.457 F:Q6IAA8:0.457
3ms6 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 THR A:4 A:4 58.0 0.414 -122.1 146.0 58.0 0.414 0.0 PEG
HOH
 6.872
5.696
 O
N
 O2
O
3msh 1 O43504 100.0 2e-61 X-RAY
 2010-11-10 THR A:4 A:4 63.0 0.45 -119.6 152.3 63.0 0.45 0.0 IPA
PG4
HOH
 9.696
6.890
2.745
 OG1
O
OG1
 O2
O5
O
5y39 5 O43504 100.0 6e-61 X-RAY
 2017-12-06 THR E:4 E:86 120.0 0.857 H -61.3 -44.6 56.0 0.4 0.457 A:Q6IAA8:0.457
THR J:4 J:86 110.0 0.786 H -64.2 -32.3 NA NA NA
5yk3 3 O43504 100.0 6e-61 X-RAY
 2019-01-23 THR C:4 o:4 122.0 0.871 H -63.9 -41.7 70.0 0.5 0.371 E:Q6IAA8:0.371
5yk5 2 O43504 100.0 2e-59 X-RAY
 2018-12-12 THR B:3 B:4 133.0 0.95 -63.5 157.8 133.0 0.95 0.0 HOH
 3.507
 CB
 O
5yk5 4 O43504 100.0 7e-58 X-RAY
 2018-12-12 THR D:1 D:4 149.0 1.0 360.0 -123.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43504-f1 1 O43504 100.0 7e-62 THR A:4 A:4 86.0 0.614 H -72.6 -43.0