Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151437 . A C CCDS1173.1:NM_001766.3:c.254cAg>cCg_NP_001757.1:p.85Q>P Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 GLN A:67 A:67 10.0 0.056 H -42.1 -49.2 10.0 0.056 0.0 AGH
 7.469
 NE2
 CAQ
GLN C:67 C:67 16.0 0.089 H -53.2 -37.6 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLN A:64 A:64 17.0 0.094 H -57.8 -45.4 17.0 0.094 0.0 AGH
CL
HOH
 7.388
8.831
3.171
 N
OE1
O
 CAS
CL
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLN A:64 A:67 9.0 0.05 H -54.6 -35.9 9.0 0.05 0.0 AGH
CL
HOH
 6.934
6.574
4.172
 OE1
O
O
 CAQ
CL
O
GLN C:64 C:67 16.0 0.089 H -54.8 -36.1 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLN A:64 A:67 17.0 0.094 H -58.8 -30.2 17.0 0.094 0.0 AGH
 7.582
 N
 CAS
GLN F:64 F:67 4.0 NA H -38.9 -53.5 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLN C:68 C:67 25.0 0.139 H -55.4 -39.6 25.0 0.139 0.0 JLS
 7.293
 OE1
 CAT
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 GLN A:68 A:67 10.0 0.056 H -58.9 -47.5 10.0 0.056 0.0 AGH
HOH
 7.093
2.783
 NE2
O
 CAQ
O
GLN C:68 C:67 5.0 0.028 H -69.2 -52.8 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLN A:68 A:67 40.0 0.222 H -63.6 -43.7 40.0 0.222 0.0 DB3
 7.961
 NE2
 CAS
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLN A:68 A:67 11.0 0.061 H -58.1 -33.9 11.0 0.061 0.0 4GH
 7.774
 N
 CAU
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLN C:68 C:67 16.0 0.089 H -50.5 -42.1 16.0 0.089 0.0 JLS
HOH
 7.090
2.757
 N
O
 CAT
O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 GLN A:68 C:67 2.0 0.011 H -57.9 -46.2 2.0 0.011 0.0 AGH
HOH
 6.825
2.427
 OE1
OE1
 CAS
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 GLN A:62 A:67 18.0 0.1 H -49.2 -32.8 18.0 0.1 0.0 GCY
HOH
 8.968
7.339
 O
NE2
 C44
O
GLN F:62 C:67 18.0 0.1 H -51.2 -35.8 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 GLN A:62 A:67 5.0 0.028 H -55.1 -37.2 5.0 0.028 0.0 AGH
 7.333
 NE2
 CAQ
GLN E:62 E:67 4.0 0.022 H -61.0 -42.5 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 GLN A:62 A:67 7.0 0.039 H -52.0 -38.5 7.0 0.039 0.0 JLS
HOH
 7.270
3.685
 NE2
NE2
 CAS
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 GLN A:62 A:67 18.0 0.1 H -71.6 -40.2 18.0 0.1 0.0 JLS
HOH
 4.971
5.480
 N
NE2
 CAV
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 GLN A:68 A:67 9.0 0.05 H -55.8 -49.3 9.0 0.05 0.0 HEX
UND
 8.810
8.362
 N
OE1
 C1
C3
GLN C:68 C:67 9.0 0.05 H -46.8 -62.6 NA NA NA
GLN E:68 E:67 8.0 0.044 H -60.1 -35.1 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 GLN C:66 C:67 8.0 0.044 H -57.9 -46.3 8.0 0.044 0.0 LSC
HEX
D12
 7.410
8.952
7.601
 O
O
N
 O33
C1
C10
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 GLN B:68 A:67 18.0 0.1 H -58.2 -40.3 18.0 0.1 0.0 CIS
HOH
 7.416
6.296
 NE2
O
 C36
O
GLN D:68 C:67 9.0 0.05 H -57.9 -40.1 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 GLN A:68 A:67 11.0 0.061 H -64.9 -44.3 11.0 0.061 0.0 CIS
HOH
 7.261
2.966
 NE2
O
 C35
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 GLN A:85 A:85 7.0 0.039 H -55.1 -44.6