Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151505 . T A CCDS1173.1:NM_001766.3:c.322Tta>Ata_NP_001757.1:p.108L>I Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 LEU A:90 A:90 32.0 0.188 -121.0 129.0 32.0 0.188 0.0 AGH
HOH
 3.458
7.381
 CD1
O
 C18
O
LEU C:90 C:90 26.0 0.153 -97.3 129.2 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:87 A:87 35.0 0.206 -81.0 96.7 35.0 0.206 0.0 AGH
HOH
 3.801
4.328
 CD1
C
 C18
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:87 A:90 35.0 0.206 -85.0 151.5 20.0 0.118 0.088 F:None:0.088
 AGH
HOH
 3.492
5.623
 CD1
CD2
 C18
O
LEU C:87 C:90 34.0 0.2 -91.6 156.6 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LEU A:87 A:90 43.0 0.253 -96.6 112.5 43.0 0.253 0.0 AGH
 4.383
 CD1
 C17
LEU F:87 F:90 34.0 0.2 -79.8 126.6 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LEU C:91 C:90 40.0 0.235 -106.1 134.1 40.0 0.235 0.0 JLS
 3.688
 CD1
 C18
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 LEU A:91 A:90 36.0 0.212 -91.5 136.7 36.0 0.212 0.0 AGH
HOH
 3.401
4.446
 CD1
O
 C18
O
LEU C:91 C:90 38.0 0.224 -100.4 148.2 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LEU A:91 A:90 35.0 0.206 -63.3 135.1 35.0 0.206 0.0 DB3
 3.718
 CD1
 C18
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LEU A:91 A:90 42.0 0.247 -69.0 162.2 42.0 0.247 0.0 4GH
HOH
 4.122
4.429
 CD1
CB
 C18
O
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LEU C:91 C:90 34.0 0.2 -104.8 130.0 34.0 0.2 0.0 JLS
 3.703
 CD1
 C17
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 LEU A:91 C:90 33.0 0.194 -103.1 150.7 33.0 0.194 0.0 AGH
HOH
 4.039
6.845
 CD1
O
 C17
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 LEU A:85 A:90 41.0 0.241 -102.4 147.5 41.0 0.241 0.0 GCY
HOH
 3.619
8.544
 CD1
CD1
 C1
O
LEU F:85 C:90 42.0 0.247 -99.4 146.8 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 LEU A:85 A:90 36.0 0.212 -103.8 125.7 36.0 0.212 0.0 AGH
 3.536
 CD1
 C18
LEU E:85 E:90 38.0 0.224 -112.8 143.8 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 LEU A:85 A:90 38.0 0.224 -116.7 129.1 38.0 0.224 0.0 JLS
HOH
 3.798
4.157
 CD1
CD2
 C18
O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 LEU A:85 A:90 30.0 0.176 -102.6 126.4 30.0 0.176 0.0 JLS
HOH
 3.708
3.895
 CD1
CD2
 C18
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 LEU A:91 A:90 32.0 0.188 -83.9 131.0 32.0 0.188 0.0 LSC
SO4
HOH
 3.181
3.902
5.667
 CD1
O
O
 C1
O2
O
LEU C:91 C:90 29.0 0.171 -79.7 133.9 NA NA NA
LEU E:91 E:90 27.0 0.159 -83.0 122.2 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 LEU C:89 C:90 40.0 0.235 -61.1 162.1 40.0 0.235 0.0 LSC
 3.686
 CD1
 C1
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LEU B:91 A:90 40.0 0.235 -75.4 137.1 40.0 0.235 0.0 CIS
 3.743
 CD1
 C17
LEU D:91 C:90 38.0 0.224 -74.2 137.8 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LEU A:91 A:90 39.0 0.229 -97.6 134.0 39.0 0.229 0.0 CIS
HOH
 3.658
5.117
 CD1
O
 C17
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 LEU A:108 A:108 36.0 0.212 -73.1 136.8