Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158151902 . C A CCDS1173.1:NM_001766.3:c.409Caa>Aaa_NP_001757.1:p.137Q>K Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 GLN A:119 A:119 88.0 0.489 T 52.1 36.6 52.0 0.289 0.2 B:P61769:0.2
 AGH
 7.599
 CG
 C18
GLN C:119 C:119 92.0 0.511 T 54.4 32.6 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLN A:116 A:116 103.0 0.572 T 61.5 49.4 70.0 0.389 0.183 B:P61769:0.183
 AGH
HOH
 8.786
4.045
 N
NE2
 C17
O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLN A:116 A:119 101.0 0.561 T 50.3 36.6 22.0 0.122 0.439 B:P61769:0.294
F:None:0.239
 AGH
HOH
 7.975
2.995
 CG
NE2
 C18
O
GLN C:116 C:119 95.0 0.528 T 49.0 37.7 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 GLN A:116 A:119 88.0 0.489 T 42.1 52.6 71.0 0.394 0.095 B:P61769:0.094
 AGH
 8.417
 CG
 C17
GLN F:116 F:119 100.0 0.556 T 50.4 33.0 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLN C:120 C:119 95.0 0.528 T 58.3 40.2 62.0 0.344 0.184 D:P61769:0.183
 JLS
 8.080
 CG
 C17
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 GLN A:120 A:119 93.0 0.517 T 49.8 36.3 68.0 0.378 0.139 B:P61769:0.139
 AGH
HOH
 8.293
2.659
 N
OE1
 C17
O
GLN C:120 C:119 89.0 0.494 T 47.5 34.9 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLN A:120 A:119 96.0 0.533 T 50.8 44.7 75.0 0.417 0.116 B:P61769:0.117
 DB3
 8.731
 N
 C17
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 GLN A:120 A:119 103.0 0.572 T 50.4 28.4 68.0 0.378 0.194 B:P61769:0.194
 4GH
HOH
 8.142
3.564
 N
NE2
 C17
O
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 GLN C:120 C:119 107.0 0.594 T 56.2 44.9 83.0 0.461 0.133 D:P61769:0.133
 JLS
 8.491
 CG
 C18
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 GLN A:120 C:119 89.0 0.494 T 60.1 30.6 65.0 0.361 0.133 D:P61769:0.133
 AGH
HOH
 8.086
3.132
 N
N
 C18
O
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 GLN A:114 A:119 83.0 0.461 T 45.9 31.3 56.0 0.311 0.15 B:P61769:0.15
 GCY
HOH
 7.803
4.733
 N
CB
 C2
O
GLN F:114 C:119 84.0 0.467 T 44.9 34.3 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 GLN A:114 A:119 82.0 0.456 T 41.1 53.9 49.0 0.272 0.184 B:P61769:0.183
 AGH
 7.372
 NE2
 C18
GLN E:114 E:119 84.0 0.467 T 53.7 44.3 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 GLN A:114 A:119 63.0 0.35 T 59.7 43.5 47.0 0.261 0.089 B:P61769:0.089
 JLS
 7.481
 NE2
 C18
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 GLN A:114 A:119 76.0 0.422 T 57.4 39.0 53.0 0.294 0.128 B:P61769:0.128
 JLS
HOH
 7.585
3.127
 NE2
N
 C18
O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 GLN A:120 A:119 87.0 0.483 T 50.4 32.1 64.0 0.356 0.127 B:P61769:0.128
 LSC
SO4
HOH
 7.980
8.943
8.096
 CG
NE2
O
 C1
O2
O
GLN C:120 C:119 91.0 0.506 T 58.1 31.3 NA NA NA
GLN E:120 E:119 93.0 0.517 T 57.0 39.4 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 GLN C:118 C:119 91.0 0.506 S 61.1 34.8 63.0 0.35 0.156 D:P61769:0.156
 LSC
 7.717
 N
 C1
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 GLN B:120 A:119 81.0 0.45 T 56.6 37.6 53.0 0.294 0.156 A:P01887:0.156
 CIS
 7.263
 NE2
 C17
GLN D:120 C:119 71.0 0.394 T 57.1 37.6 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 GLN A:120 A:119 73.0 0.406 T 56.9 41.1 50.0 0.278 0.128 B:P01887:0.128
 CIS
HOH
 7.112
5.945
 NE2
O
 C17
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 GLN A:137 A:137 94.0 0.522 T 53.1 41.2