Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152080 . A C CCDS1173.1:NM_001766.3:c.587aAg>aCg_NP_001757.1:p.196K>T Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 LYS A:178 A:178 111.0 0.555 H -29.7 -62.8 111.0 0.555 0.0
LYS C:178 C:178 114.0 0.57 H -31.8 -61.6 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LYS A:175 A:175 132.0 0.66 H -36.7 -56.4 132.0 0.66 0.0 HOH
 4.975
 O
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LYS A:175 A:178 45.0 NA H -49.4 -40.5 45.0 NA NA
LYS C:175 C:178 54.0 NA H -49.8 -40.4 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 LYS A:175 A:178 105.0 0.525 H -53.9 -41.3 105.0 0.525 0.0
LYS F:175 F:178 117.0 0.585 H -56.1 -40.2 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LYS C:179 C:178 52.0 NA H -36.4 -59.0 52.0 NA NA
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 LYS A:179 A:178 128.0 0.64 H -41.0 -59.7 128.0 0.64 0.0 HOH
 7.582
 NZ
 O
LYS C:179 C:178 35.0 NA H -58.5 -52.8 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LYS A:179 A:178 45.0 NA -100.9 -19.8 45.0 NA NA
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 LYS A:179 A:178 59.0 NA H -74.6 -28.8 59.0 NA NA
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 LYS C:179 C:178 117.0 0.585 H -50.7 -42.9 117.0 0.585 0.0 HOH
 4.134
 CG
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 LYS A:179 C:178 120.0 0.6 H -66.2 -35.2 120.0 0.6 0.0
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 LYS A:173 A:178 117.0 0.585 T -53.7 -55.7 117.0 0.585 0.0
LYS F:173 C:178 118.0 0.59 H -53.0 -55.7 NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 LYS A:173 A:178 103.0 0.515 H -38.1 -60.3 103.0 0.515 0.0
LYS E:173 E:178 70.0 0.35 H -61.9 -55.2 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 LYS A:173 A:178 86.0 0.43 H -53.8 -42.2 86.0 0.43 0.0
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 LYS A:173 A:178 119.0 0.595 H -31.7 -60.6 119.0 0.595 0.0 HOH
 3.956
 CA
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 LYS A:179 A:178 121.0 0.605 H -40.4 -49.2 121.0 0.605 0.0 GOL
HOH
 7.608
8.341
 O
NZ
 O1
O
LYS C:179 C:178 105.0 0.525 H -42.3 -48.9 NA NA NA
LYS E:179 E:178 135.0 0.675 H -66.0 -15.4 NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 LYS C:177 C:178 134.0 0.67 H -36.4 -47.4 134.0 0.67 0.0
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LYS B:179 A:178 40.0 NA H -59.8 -41.0 40.0 NA NA
LYS D:179 C:178 122.0 0.61 H -61.1 -38.1 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 LYS A:179 A:178 53.0 NA H -69.3 -24.7 53.0 NA NA HOH
 7.221
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 LYS A:196 A:196 119.0 0.595 H -50.5 -41.8