Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 158152883 . G A CCDS1173.1:NM_001766.3:c.823Gct>Act_NP_001757.1:p.275A>T Homo sapiens CD1d molecule (CD1D), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zt4 1 P15813 100.0 0.0 X-RAY
 2005-07-19 ALA A:257 A:257 70.0 0.609 S -87.3 160.6 70.0 0.609 0.0
ALA C:257 C:257 67.0 0.583 T -88.3 160.1 NA NA NA
6v7y 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ALA A:254 A:254 62.0 0.539 -129.4 33.6 62.0 0.539 0.0 HOH
 3.445
 N
 O
6v7z 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ALA A:254 A:257 72.0 0.626 T -61.6 129.7 72.0 0.626 0.0
ALA C:254 C:257 86.0 0.748 -144.1 173.4 NA NA NA
6v80 1 P15813 100.0 0.0 X-RAY
 2020-09-16 ALA A:254 A:257 66.0 0.574 T -76.7 128.2 66.0 0.574 0.0
ALA F:254 F:257 59.0 0.513 S -82.1 80.6 NA NA NA
4wwk 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ALA C:258 C:257 71.0 0.617 T -69.0 134.1 71.0 0.617 0.0
3huj 1 P15813 99.28 0.0 X-RAY
 2009-07-28 ALA A:258 A:257 56.0 0.487 61.9 91.8 56.0 0.487 0.0 HOH
 2.711
 O
 O
ALA C:258 C:257 79.0 0.687 S -156.5 118.5 NA NA NA
3vwj 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ALA A:258 NA:NA DO NA DO DO DO NA NA NA
3vwk 1 P15813 99.28 0.0 X-RAY
 2012-10-03 ALA A:258 NA:NA DO NA DO DO DO NA NA NA
4ww2 3 P15813 99.28 0.0 X-RAY
 2016-02-03 ALA C:258 C:257 70.0 0.609 T -67.2 139.6 70.0 0.609 0.0 HOH
 6.673
 N
 O
4en3 1 P15813 100.0 0.0 X-RAY
 2012-10-31 ALA A:258 C:257 113.0 0.983 360.0 86.0 113.0 0.983 0.0
3sdx 1 P15813 100.0 0.0 X-RAY
 2011-10-05 ALA A:252 A:257 58.0 0.504 S -55.3 151.7 58.0 0.504 0.0
ALA F:252 NA:NA DO NA DO DO DO NA NA NA
2po6 1 P15813 100.0 0.0 X-RAY
 2007-07-03 ALA A:252 A:257 72.0 0.626 T -62.8 117.7 72.0 0.626 0.0
ALA E:252 E:257 86.0 0.748 T -69.2 130.1 NA NA NA
4lhu 1 P15813 100.0 0.0 X-RAY
 2013-10-02 ALA A:252 A:257 71.0 0.617 T -69.3 130.0 71.0 0.617 0.0 HOH
 5.744
 C
 O
4wo4 1 P15813 100.0 0.0 X-RAY
 2014-11-26 ALA A:252 A:257 53.0 0.461 T -64.3 129.0 53.0 0.461 0.0 HOH
 3.805
 C
 O
3u0p 1 P15813 98.91 0.0 X-RAY
 2012-04-25 ALA A:258 A:257 74.0 0.643 T -58.3 124.9 74.0 0.643 0.0 HOH
 2.959
 O
 O
ALA C:258 C:257 76.0 0.661 T -56.7 131.7 NA NA NA
ALA E:258 NA:NA DO NA DO DO DO NA NA NA
3tzv 3 P15813 98.91 0.0 X-RAY
 2012-04-25 ALA C:256 C:258 83.0 0.722 -98.4 -47.5 83.0 0.722 0.0
4mng 2 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ALA B:258 A:257 74.0 0.643 T -61.3 134.1 74.0 0.643 0.0
ALA D:258 C:257 72.0 0.626 T -61.6 134.1 NA NA NA
4mq7 1 P15813,Q7TMK5 92.06 0.0 X-RAY
 2013-12-18 ALA A:258 A:257 80.0 0.696 T -72.2 137.8 80.0 0.696 0.0 HOH
 3.949
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15813-f1 1 P15813 100.0 0.0 ALA A:275 A:275 76.0 0.661 T -64.0 138.5