Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 202568382 | . | C | A | CCDS1427.1:NM_001136504.1:c.1017gaG>gaT_NP_001129976.1:p.339E>D | Homo sapiens synaptotagmin 2 (SYT2), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5w5c | 6 | P21707 | 86.52 | 1e-174 |
X-RAY |
2017-08-23 | GLU | F:202 | F:341 | 36.0 | 0.189 | E | -118.1 | 128.8 | 36.0 | 0.189 | 0.0 |
GOL HOH |
7.741 2.557 |
OE1 OE2 |
O3 O |
||
| 2r83 | 1 | P21579 | 86.17 | 5e-174 |
X-RAY |
2008-02-12 | GLU | A:204 | A:341 | 37.0 | 0.195 | E | -109.8 | 128.4 | 37.0 | 0.195 | 0.0 |
HOH |
6.686 |
N |
O |
||
| GLU | B:204 | B:341 | 37.0 | 0.195 | E | -108.6 | 128.0 | 37.0 | 0.195 | 0.0 |
HOH |
6.884 |
C |
O |
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| 5ccg | 5 | P21707 | 86.79 | 6e-174 |
X-RAY |
2015-08-12 | GLU | E:201 | E:341 | 38.0 | 0.2 | E | -115.7 | 123.0 | 38.0 | 0.2 | 0.0 | ||||||
| GLU | F:201 | F:341 | 37.0 | 0.195 | E | -113.2 | 123.0 | 37.0 | 0.195 | 0.0 | |||||||||||||
| GLU | K:201 | K:341 | 41.0 | 0.216 | E | -114.5 | 122.6 | NA | NA | NA | |||||||||||||
| 5cch | 5 | P21707 | 86.79 | 6e-174 |
X-RAY |
2015-08-12 | GLU | E:201 | E:341 | 39.0 | 0.205 | E | -116.5 | 128.2 | 39.0 | 0.205 | 0.0 | ||||||
| GLU | F:201 | F:341 | 38.0 | 0.2 | E | -116.6 | 128.6 | 38.0 | 0.2 | 0.0 | |||||||||||||
| 5cci | 5 | P21707 | 86.79 | 6e-174 |
X-RAY |
2015-08-12 | GLU | E:201 | E:341 | 39.0 | 0.205 | E | -121.5 | 129.8 | 39.0 | 0.205 | 0.0 | ||||||
| GLU | F:201 | F:341 | 46.0 | 0.242 | E | -121.5 | 130.5 | 46.0 | 0.242 | 0.0 | |||||||||||||
| 6mti | 2 | P21707 | 86.79 | 6e-174 |
EM |
2019-04-24 | GLU | B:201 | 2:622 | 39.0 | 0.205 | E | -121.4 | 129.8 | 39.0 | 0.205 | 0.0 | ||||||
| GLU | C:201 | 3:622 | 38.0 | 0.2 | E | -121.5 | 129.9 | 38.0 | 0.2 | 0.0 | |||||||||||||
| GLU | D:201 | 4:622 | 36.0 | 0.189 | E | -121.5 | 129.8 | 36.0 | 0.189 | 0.0 | |||||||||||||
| GLU | E:201 | 5:622 | 37.0 | 0.195 | E | -121.5 | 129.8 | 37.0 | 0.195 | 0.0 | |||||||||||||
| 5kj7 | 5 | P21707 | 87.36 | 6e-174 |
X-RAY |
2016-10-19 | GLU | E:201 | E:341 | 37.0 | 0.195 | E | -119.6 | 122.5 | 37.0 | 0.195 | 0.0 | ||||||
| GLU | F:201 | F:341 | 36.0 | 0.189 | E | -107.1 | 137.1 | NA | NA | NA | |||||||||||||
| GLU | K:201 | K:341 | 43.0 | 0.226 | E | -118.5 | 121.8 | NA | NA | NA | |||||||||||||
| 5kj8 | 5 | P21707 | 87.36 | 6e-174 |
X-RAY |
2016-10-19 | GLU | E:201 | E:341 | 40.0 | 0.211 | E | -113.3 | 126.5 | 40.0 | 0.211 | 0.0 | ||||||
| GLU | F:201 | F:341 | 38.0 | 0.2 | E | -111.4 | 126.9 | NA | NA | NA | |||||||||||||
| GLU | K:201 | K:341 | 46.0 | 0.242 | E | -112.1 | 126.7 | NA | NA | NA | |||||||||||||
| 6tz3 | 1 | P21579 | 84.71 | 1e-84 |
X-RAY |
2020-05-13 | GLU | A:77 | A:342 | 36.0 | 0.189 | E | -122.1 | 128.7 | 36.0 | 0.189 | 0.0 |
HOH |
2.630 |
OE1 |
O |
||
| 2yoa | 1 | P21707 | 87.42 | 2e-84 |
X-RAY |
2013-03-20 | GLU | A:72 | A:341 | 38.0 | 0.2 | E | -112.9 | 122.5 | 38.0 | 0.2 | 0.0 |
SCN HOH |
8.744 2.635 |
OE2 OE2 |
S O |
||
| GLU | B:72 | B:341 | 37.0 | 0.195 | E | -113.6 | 123.8 | NA | NA | NA | |||||||||||||
| 5t0s | 1 | P46096 | 87.42 | 2e-84 |
X-RAY |
2017-06-14 | GLU | A:71 | A:341 | 35.0 | 0.184 | E | -115.4 | 128.3 | 35.0 | 0.184 | 0.0 |
HOH |
2.584 |
OE2 |
O |
||
| 2lha | 1 | P21579 | 87.42 | 3e-84 |
NMR |
2012-05-02 | GLU | A:72 | A:341 | 55.0 | 0.289 | E | -124.9 | 151.4 | 55.0 | 0.289 | 0.0 |
IHP |
7.326 |
OE2 |
O26 |
||
| 5w5d | 6 | P21707 | 87.42 | 3e-84 |
X-RAY |
2017-08-23 | GLU | F:72 | F:341 | 37.0 | 0.195 | E | -119.5 | 129.2 | 37.0 | 0.195 | 0.0 |
HOH |
2.833 |
OE1 |
O |
||
| 6u4u | 1 | P21579 | 84.71 | 4e-84 |
X-RAY |
2020-05-13 | GLU | A:77 | A:342 | 36.0 | 0.189 | E | -121.4 | 128.5 | 36.0 | 0.189 | 0.0 |
HOH |
2.654 |
OE1 |
O |
||
| 1tjm | 1 | P21707 | 84.81 | 4e-84 |
X-RAY |
2004-09-28 | GLU | A:79 | A:341 | 37.0 | 0.195 | E | -118.0 | 129.6 | 37.0 | 0.195 | 0.0 |
HOH |
1.915 |
OE1 |
H1 |
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| 1tjx | 1 | P21707 | 84.81 | 4e-84 |
X-RAY |
2004-11-23 | GLU | A:79 | A:341 | 36.0 | 0.189 | E | -117.2 | 129.1 | 36.0 | 0.189 | 0.0 |
HOH |
2.019 |
OE2 |
H2 |
||
| 1uov | 1 | P21707 | 84.81 | 4e-84 |
X-RAY |
2004-09-09 | GLU | A:79 | A:341 | 35.0 | 0.184 | E | -118.7 | 127.2 | 35.0 | 0.184 | 0.0 |
GOL HOH |
3.768 2.709 |
CG OE1 |
O3 O |
||
| 1uow | 1 | P21707 | 84.81 | 4e-84 |
X-RAY |
2004-09-16 | GLU | A:79 | A:341 | 37.0 | 0.195 | E | -117.3 | 129.1 | 37.0 | 0.195 | 0.0 |
HOH |
2.642 |
OE1 |
O |
||
| 6u4w | 1 | P21579 | 84.08 | 7e-84 |
X-RAY |
2020-05-13 | GLU | A:77 | A:342 | 39.0 | 0.205 | E | -125.0 | 130.4 | 39.0 | 0.205 | 0.0 |
HOH |
2.334 |
OE1 |
O |
||
| 2n1t | 5 | P21579 | 85.81 | 7e-84 |
NMR |
2015-06-03 | GLU | E:79 | E:341 | 33.0 | 0.174 | E | -115.8 | 140.6 | 33.0 | 0.174 | 0.0 | ||||||
| 4v11 | 1 | P21579 | 87.33 | 1e-83 |
X-RAY |
2015-02-25 | GLU | A:70 | A:342 | 39.0 | 0.205 | E | -117.0 | 130.1 | 14.0 | 0.074 | 0.131 |
B:Q7L0J3:0.132 |
HOH |
2.715 |
OE1 |
O |
|
| 5vff | 1 | P46096 | 86.75 | 2e-83 |
X-RAY |
2018-04-11 | GLU | A:71 | A:341 | 38.0 | 0.2 | E | -115.4 | 127.9 | 38.0 | 0.2 | 0.0 |
HOH |
2.656 |
OE1 |
O |
||
| 5vfg | 1 | P46096 | 86.75 | 2e-83 |
X-RAY |
2018-04-11 | GLU | A:71 | A:341 | 38.0 | 0.2 | E | -116.0 | 128.3 | 38.0 | 0.2 | 0.0 |
HOH |
2.463 |
OE1 |
O |
||
| 6u41 | 1 | P21579 | 84.08 | 2e-83 |
X-RAY |
2020-05-13 | GLU | A:77 | A:342 | 35.0 | 0.184 | E | -120.9 | 131.2 | 35.0 | 0.184 | 0.0 |
HOH |
2.634 |
OE1 |
O |
||
| 5ccj | 1 | P21707 | 84.11 | 8e-80 |
X-RAY |
2015-08-12 | GLU | A:72 | A:341 | 36.0 | 0.189 | E | -117.1 | 128.9 | 36.0 | 0.189 | 0.0 |
GOL SO4 HOH |
7.065 6.640 2.622 |
OE1 N OE1 |
O3 O2 O |
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| GLU | B:72 | B:341 | 34.0 | 0.179 | E | -119.3 | 133.6 | NA | NA | NA | |||||||||||||
| GLU | C:72 | C:341 | 37.0 | 0.195 | E | -118.7 | 128.9 | NA | NA | NA | |||||||||||||
| GLU | D:72 | D:341 | 35.0 | 0.184 | E | -118.9 | 135.0 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q8n9i0-f1 | 1 | Q8N9I0 | 100.0 | 0.0 | GLU | A:339 | A:339 | 39.0 | 0.205 | E | -111.6 | 125.4 | |