Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 218614634 | . | A | C | CCDS1521.1:NM_003238.3:c.1175tAc>tCc_NP_003229.1:p.392Y>S | Homo sapiens transforming growth factor beta 2 (TGFB2), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1tfg | 1 | P61812 | 100.0 | 2e-79 |
X-RAY |
1993-10-31 | TYR | A:90 | A:90 | 31.0 | 0.135 | E | -137.5 | 154.3 | 31.0 | 0.135 | 0.0 |
HOH |
3.864 |
OH |
O |
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2tgi | 1 | P61812 | 100.0 | 2e-79 |
X-RAY |
1994-01-31 | TYR | A:90 | A:90 | 31.0 | 0.135 | E | -140.4 | 159.6 | 31.0 | 0.135 | 0.0 | ||||||
4kxz | 1 | P61812 | 100.0 | 2e-79 |
X-RAY |
2014-09-24 | TYR | A:90 | A:90 | 49.0 | 0.213 | E | -134.9 | 159.1 | 0.0 | 0.0 | 0.213 |
E:None:0.213 |
MES HOH |
6.074 3.353 |
OH CA |
C2 O |
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TYR | B:90 | B:90 | 51.0 | 0.222 | E | -140.4 | 158.4 | 6.0 | 0.026 | 0.196 |
F:None:0.196 |
HOH |
7.033 |
OH |
O |
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TYR | C:90 | D:90 | 48.0 | 0.209 | E | -132.5 | 158.2 | NA | NA | NA | |||||||||||||
TYR | D:90 | E:90 | 48.0 | 0.209 | E | -137.4 | 156.8 | NA | NA | NA | |||||||||||||
6i9j | 1 | P61812 | 100.0 | 2e-79 |
X-RAY |
2019-07-03 | TYR | A:90 | A:392 | 51.0 | 0.222 | E | -134.9 | 178.8 | 51.0 | 0.222 | 0.0 |
HOH |
6.056 |
OH |
O |
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6xm2 | 3 | P61812 | 100.0 | 2e-79 |
X-RAY |
2021-07-07 | TYR | I:90 | I:392 | 51.0 | 0.222 | E | -143.1 | 168.3 | NA | NA | NA | ||||||
TYR | J:90 | J:392 | 29.0 | 0.126 | E | -141.9 | 166.4 | NA | NA | NA | |||||||||||||
TYR | K:90 | K:392 | 36.0 | 0.157 | E | -134.8 | 172.3 | 36.0 | 0.157 | 0.0 |
HOH |
3.745 |
CA |
O |
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TYR | L:90 | L:392 | 40.0 | 0.174 | E | -138.0 | 168.2 | 40.0 | 0.174 | 0.0 |
HOH |
7.213 |
O |
O |
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7rco | 1 | P61812 | 100.0 | 2e-79 |
X-RAY |
2021-09-29 | TYR | A:90 | A:392 | 48.0 | 0.209 | B | -154.4 | 163.3 | 48.0 | 0.209 | 0.0 | ||||||
TYR | B:90 | B:392 | 51.0 | 0.222 | E | -127.5 | 178.4 | 51.0 | 0.222 | 0.0 |
HOH |
9.326 |
CE1 |
O |
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5ty4 | 2 | ? | 92.78 | 2e-64 |
ELECTRON CRYSTALLOGRAPHY |
2017-04-26 | TYR | B:76 | B:390 | 68.0 | 0.296 | E | -163.4 | 164.7 | 60.0 | 0.261 | 0.035 |
A:P37173:0.035 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p61812-f1 | 1 | P61812 | 93.44 | 0.0 | TYR | A:392 | A:392 | 4.0 | 0.017 | E | -142.3 | 168.7 |