Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 22413164 | . | G | A | CCDS221.1:NM_001039802.1:c.291tgG>tgA_NP_001034891.1:p.97W>* | Homo sapiens cell division cycle 42 (CDC42), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 2odb | 1 | P60953 | 100.0 | 1e-141 |
X-RAY |
2007-01-30 | TRP | A:98 | A:97 | 0.0 | 0.0 | I | -81.2 | -49.0 | 0.0 | 0.0 | 0.0 |
GCP HOH |
7.177 3.299 |
CZ2 CH2 |
O2G O |
||
| 5c2j | 2 | P60766 | 100.0 | 1e-141 |
X-RAY |
2016-06-22 | TRP | B:104 | B:97 | 0.0 | 0.0 | I | -61.4 | -50.7 | 0.0 | 0.0 | 0.0 |
GDP AF3 HOH |
8.723 6.894 3.756 |
CZ2 CZ2 NE1 |
O1B F2 O |
||
| 2dfk | 2 | P60953 | 100.0 | 1e-141 |
X-RAY |
2006-05-02 | TRP | B:100 | B:97 | 1.0 | 0.004 | I | -70.8 | -49.9 | 1.0 | 0.004 | 0.0 |
SO4 HOH |
8.771 3.567 |
CZ2 CH2 |
O3 O |
||
| TRP | D:100 | D:97 | 4.0 | 0.016 | I | -71.1 | -51.2 | NA | NA | NA | |||||||||||||
| 1grn | 1 | P60953 | 100.0 | 2e-141 |
X-RAY |
1999-12-22 | TRP | A:97 | A:97 | 0.0 | 0.0 | I | -58.9 | -63.1 | 0.0 | 0.0 | 0.0 |
GDP AF3 HOH |
8.830 6.990 3.133 |
CZ2 CZ2 NE1 |
O1B F2 O |
||
| 2ngr | 1 | P60953 | 100.0 | 2e-141 |
X-RAY |
1999-01-06 | TRP | A:97 | A:97 | 0.0 | 0.0 | I | -52.6 | -59.2 | 0.0 | 0.0 | 0.0 |
GDP AF3 HOH |
8.805 7.097 3.239 |
CZ2 CZ2 CH2 |
O1B F2 O |
||
| 4itr | 2 | P60953 | 100.0 | 2e-141 |
X-RAY |
2013-02-20 | TRP | C:97 | C:97 | 0.0 | 0.0 | I | -68.1 | -52.1 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.765 3.329 |
CZ2 CH2 |
O3B O |
||
| TRP | D:97 | D:97 | 0.0 | 0.0 | I | -69.6 | -52.3 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.827 3.134 |
CZ2 CH2 |
O3B O |
|||||||||
| 6siu | 2 | P60953 | 100.0 | 3e-141 |
X-RAY |
2020-03-18 | TRP | C:98 | C:97 | 0.0 | 0.0 | I | -70.8 | -55.9 | 0.0 | 0.0 | 0.0 |
GDP GOL HOH |
8.418 8.302 3.512 |
CZ2 CH2 CD1 |
O3B O1 O |
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| TRP | D:98 | D:97 | 0.0 | 0.0 | I | -74.9 | -52.2 | 0.0 | 0.0 | 0.0 |
GDP GOL HOH |
8.536 8.218 4.073 |
CZ2 CH2 CD1 |
O3B O1 O |
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| 5fi1 | 2 | P60953 | 100.0 | 3e-141 |
X-RAY |
2016-04-20 | TRP | B:100 | B:97 | 2.0 | 0.008 | I | -75.7 | -56.3 | 2.0 | 0.008 | 0.0 | ||||||
| 1an0 | 1 | P60953 | 100.0 | 1e-140 |
X-RAY |
1999-01-13 | TRP | A:97 | A:97 | 0.0 | 0.0 | I | -61.3 | -61.0 | 0.0 | 0.0 | 0.0 |
GDP HOH |
9.292 5.554 |
CZ2 CZ2 |
O3B O |
||
| TRP | B:97 | B:97 | 0.0 | 0.0 | I | -53.8 | -67.2 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.688 7.188 |
CZ2 O |
O1B O |
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| 1a4r | 1 | P60953 | 99.48 | 4e-140 |
X-RAY |
1999-03-02 | TRP | A:97 | A:97 | 0.0 | 0.0 | I | -61.7 | -57.8 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.978 3.501 |
CZ2 NE1 |
O2B O |
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| TRP | B:97 | B:297 | 0.0 | 0.0 | I | -51.8 | -52.5 | 0.0 | 0.0 | 0.0 |
GNH |
8.943 |
CZ2 |
O2B |
|||||||||
| 2qrz | 1 | P60953 | 100.0 | 4e-140 |
X-RAY |
2008-03-18 | TRP | A:97 | A:97 | 1.0 | 0.004 | I | -69.2 | -49.9 | 1.0 | 0.004 | 0.0 |
GCP HOH |
7.609 3.278 |
CZ2 CH2 |
O3G O |
||
| TRP | B:97 | B:97 | 0.0 | 0.0 | I | -51.6 | -65.3 | 0.0 | 0.0 | 0.0 |
GCP HOH |
7.174 8.218 |
CH2 CZ3 |
O3G O |
|||||||||
| 2wm9 | 2 | P60953 | 100.0 | 1e-139 |
X-RAY |
2009-09-22 | TRP | B:99 | B:97 | 0.0 | 0.0 | I | -70.0 | -55.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.410 |
CH2 |
O |
||
| 2wmn | 2 | P60953 | 100.0 | 1e-139 |
X-RAY |
2009-09-22 | TRP | B:99 | B:97 | 0.0 | 0.0 | I | -74.7 | -70.2 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.655 6.784 |
CZ2 CZ3 |
O3B O |
||
| 2wmo | 2 | P60953 | 100.0 | 1e-139 |
X-RAY |
2009-09-22 | TRP | B:99 | B:97 | 0.0 | 0.0 | I | -73.5 | -64.1 | 0.0 | 0.0 | 0.0 |
GTP HOH |
7.587 3.349 |
CZ2 NE1 |
O1G O |
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| 1nf3 | 1 | P60953 | 98.95 | 1e-139 |
X-RAY |
2003-03-04 | TRP | A:101 | A:97 | 0.0 | 0.0 | I | -53.7 | -53.4 | 0.0 | 0.0 | 0.0 |
GNP HOH |
7.133 2.869 |
CH2 CZ3 |
O1G O |
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| TRP | B:101 | B:97 | 0.0 | 0.0 | I | -61.5 | -52.3 | NA | NA | NA | |||||||||||||
| 1doa | 1 | P60953 | 100.0 | 1e-139 |
X-RAY |
2000-02-09 | TRP | A:100 | A:97 | 0.0 | 0.0 | I | -47.4 | -68.2 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.918 5.486 |
CZ2 CZ3 |
O1B O |
||
| 6tky | 2 | P60953 | 100.0 | 2e-139 |
X-RAY |
2020-01-22 | TRP | B:97 | C:97 | 2.0 | 0.008 | I | -74.3 | -55.8 | NA | NA | NA | ||||||
| TRP | C:97 | D:97 | 0.0 | 0.0 | I | -76.2 | -56.2 | 0.0 | 0.0 | 0.0 |
GOL HOH |
9.144 3.455 |
CZ2 CH2 |
O3 O |
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| 6tkz | 2 | P60953 | 100.0 | 2e-139 |
X-RAY |
2020-01-22 | TRP | B:97 | C:97 | 2.0 | 0.008 | I | -73.5 | -48.8 | NA | NA | NA | ||||||
| TRP | C:97 | D:97 | 0.0 | 0.0 | I | -73.9 | -53.1 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.806 3.140 |
CZ2 CH2 |
O3B O |
|||||||||
| 6aj4 | 2 | P60953 | 100.0 | 1e-138 |
X-RAY |
2019-03-20 | TRP | B:104 | B:97 | 0.0 | 0.0 | I | -69.8 | -44.3 | 0.0 | 0.0 | 0.0 | ||||||
| TRP | D:104 | D:97 | 0.0 | 0.0 | I | -66.2 | -59.9 | NA | NA | NA | |||||||||||||
| TRP | F:104 | F:97 | 0.0 | 0.0 | I | -75.9 | -55.6 | NA | NA | NA | |||||||||||||
| TRP | H:104 | H:97 | 1.0 | 0.004 | I | -75.3 | -61.6 | NA | NA | NA | |||||||||||||
| 6ajl | 2 | P60953 | 100.0 | 1e-138 |
X-RAY |
2019-03-20 | TRP | B:104 | B:97 | 0.0 | 0.0 | I | -73.4 | -63.7 | 0.0 | 0.0 | 0.0 | ||||||
| TRP | D:104 | D:97 | 0.0 | 0.0 | I | -72.4 | -60.2 | NA | NA | NA | |||||||||||||
| TRP | F:104 | F:97 | 0.0 | 0.0 | I | -72.4 | -55.8 | NA | NA | NA | |||||||||||||
| TRP | H:104 | H:97 | 0.0 | 0.0 | I | -70.9 | -64.3 | NA | NA | NA | |||||||||||||
| 1ki1 | 1 | P60953 | 100.0 | 1e-138 |
X-RAY |
2002-05-29 | TRP | A:97 | A:97 | 2.0 | 0.008 | I | -58.8 | -53.0 | 2.0 | 0.008 | 0.0 |
SO4 HOH |
8.832 3.342 |
CZ2 CH2 |
O2 O |
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| TRP | C:97 | C:97 | 2.0 | 0.008 | I | -58.7 | -53.2 | NA | NA | NA | |||||||||||||
| 1kz7 | 2 | P60953 | 100.0 | 1e-138 |
X-RAY |
2002-03-20 | TRP | B:97 | B:97 | 2.0 | 0.008 | I | -65.6 | -58.3 | 2.0 | 0.008 | 0.0 |
HOH |
3.061 |
CH2 |
O |
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| TRP | D:97 | D:1097 | 2.0 | 0.008 | I | -59.8 | -54.8 | NA | NA | NA | |||||||||||||
| 1kzg | 2 | P60953 | 100.0 | 1e-138 |
X-RAY |
2002-03-20 | TRP | B:97 | B:97 | 2.0 | 0.008 | I | -62.3 | -57.4 | 2.0 | 0.008 | 0.0 |
HOH |
3.256 |
CH2 |
O |
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| TRP | D:97 | D:1097 | 2.0 | 0.008 | I | -60.8 | -57.9 | NA | NA | NA | |||||||||||||
| 3vhl | 2 | P60953 | 99.47 | 6e-138 |
X-RAY |
2012-06-20 | TRP | B:104 | B:97 | 0.0 | 0.0 | I | -64.5 | -54.4 | 0.0 | 0.0 | 0.0 |
PO4 HOH |
9.150 3.482 |
CZ2 CH2 |
O2 O |
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| 4did | 1 | P60953 | 100.0 | 2e-135 |
X-RAY |
2012-02-29 | TRP | A:107 | A:97 | 0.0 | 0.0 | I | -65.7 | -58.8 | 0.0 | 0.0 | 0.0 |
GDP HOH |
8.791 3.303 |
CZ2 NE1 |
O3B O |
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| 1e0a | 1 | P60953 | 99.46 | 1e-134 |
NMR |
2000-04-18 | TRP | A:97 | A:97 | 50.0 | 0.196 | I | -95.5 | -36.8 | 50.0 | 0.196 | 0.0 |
GNP HOH |
9.058 8.421 |
HE1 HZ2 |
O1B H1 |
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| 5hzk | 1 | P60953 | 96.79 | 3e-134 |
X-RAY |
2016-12-21 | TRP | A:99 | A:97 | 1.0 | 0.004 | I | -69.0 | -49.6 | 1.0 | 0.004 | 0.0 |
GDP |
8.561 |
CZ2 |
O1B |
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| TRP | C:99 | C:97 | 1.0 | 0.004 | I | -66.7 | -50.7 | NA | NA | NA | |||||||||||||
| 4yc7 | 2 | P60953 | 99.44 | 1e-131 |
X-RAY |
2015-05-13 | TRP | B:99 | A:96 | 0.0 | 0.0 | I | -69.4 | -47.5 | 0.0 | 0.0 | 0.0 |
GNP HOH |
7.292 3.367 |
CH2 NE1 |
O1G O |
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| 4ydh | 2 | P60953 | 99.44 | 1e-131 |
X-RAY |
2015-05-13 | TRP | B:99 | B:97 | 7.0 | 0.027 | I | -68.2 | -58.9 | 7.0 | 0.027 | 0.0 |
GNP |
7.314 |
CZ2 |
O3G |
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| TRP | D:99 | D:97 | 5.0 | 0.02 | I | -66.0 | -58.8 | 5.0 | 0.02 | 0.0 |
GNP |
7.541 |
CH2 |
O3G |
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| 1gzs | 1 | P25763 | 100.0 | 3e-131 |
X-RAY |
2002-09-12 | TRP | A:99 | A:97 | 2.0 | 0.008 | I | -57.3 | -57.6 | 2.0 | 0.008 | 0.0 |
SO4 SO4 HOH |
6.460 8.780 3.265 |
CH2 CZ2 CZ3 |
O3 O2 O |
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| TRP | C:99 | C:97 | 1.0 | 0.004 | I | -59.5 | -58.9 | NA | NA | NA | |||||||||||||
| 3eg5 | 1 | P60766 | 99.44 | 6e-131 |
X-RAY |
2008-10-14 | TRP | A:97 | A:97 | 1.0 | 0.004 | I | -71.3 | -50.3 | 1.0 | 0.004 | 0.0 |
GNP HOH |
7.372 3.403 |
CZ2 CH2 |
O3G O |
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| TRP | C:97 | C:97 | 0.0 | 0.0 | I | -70.8 | -48.7 | 0.0 | 0.0 | 0.0 |
GNP HOH |
7.312 3.298 |
CZ2 CH2 |
O3G O |
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| 5upl | 2 | P60953 | 100.0 | 1e-130 |
X-RAY |
2017-12-27 | TRP | B:97 | B:97 | 0.0 | 0.0 | I | -69.6 | -58.9 | 0.0 | 0.0 | 0.0 | ||||||
| 3gcg | 1 | P60953 | 100.0 | 6e-130 |
X-RAY |
2009-07-21 | TRP | A:101 | A:97 | 3.0 | 0.012 | I | -69.6 | -54.6 | 3.0 | 0.012 | 0.0 |
HOH |
3.365 |
CZ2 |
O |
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| 4js0 | 1 | P60953 | 99.44 | 6e-130 |
X-RAY |
2014-03-05 | TRP | A:97 | A:97 | 0.0 | 0.0 | I | -73.8 | -49.3 | 0.0 | 0.0 | 0.0 |
GNP PE4 HOH |
6.814 9.964 3.234 |
HZ2 HD1 HE1 |
O1G C4 O |
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| 3qbv | 1 | P60953 | 99.44 | 6e-130 |
X-RAY |
2012-02-08 | TRP | A:97 | A:97 | 4.0 | 0.016 | I | -79.9 | -51.0 | 4.0 | 0.016 | 0.0 |
GDP HOH |
9.041 3.419 |
CZ2 NE1 |
O1B O |
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| TRP | C:97 | C:97 | 3.0 | 0.012 | I | -80.3 | -50.3 | NA | NA | NA | |||||||||||||
| 5cjp | 1 | A0A024RAE4 | 99.44 | 3e-129 |
X-RAY |
2016-08-10 | TRP | A:99 | A:97 | 0.0 | 0.0 | I | -60.3 | -53.6 | 0.0 | 0.0 | 0.0 |
GTP MG HOH |
7.351 9.649 3.430 |
CH2 CH2 CZ3 |
O1G MG O |
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| TRP | B:99 | B:97 | 1.0 | 0.004 | I | -58.5 | -59.1 | 1.0 | 0.004 | 0.0 |
GTP MG HOH |
7.232 9.488 3.338 |
CH2 CH2 CZ3 |
O2G MG O |
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| TRP | C:99 | C:97 | 0.0 | 0.0 | I | -52.1 | -66.5 | 0.0 | 0.0 | 0.0 |
GTP MG HOH |
7.180 9.867 7.016 |
CH2 CH2 CZ2 |
O2G MG O |
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| TRP | D:99 | D:97 | 1.0 | 0.004 | I | -45.7 | -77.5 | 1.0 | 0.004 | 0.0 |
GTP MG HOH |
7.298 9.619 9.611 |
CH2 CH2 O |
O2G MG O |
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| 5upk | 3 | P60953 | 98.87 | 4e-129 |
X-RAY |
2017-12-27 | TRP | C:97 | C:97 | 0.0 | 0.0 | I | -57.2 | -49.8 | 0.0 | 0.0 | 0.0 |
GNP |
7.167 |
CH2 |
O2G |
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| 1am4 | 2 | P60953 | 99.43 | 7e-129 |
X-RAY |
1998-07-15 | TRP | B:97 | D:597 | 0.0 | 0.0 | I | -66.7 | -63.0 | 0.0 | 0.0 | 0.0 |
GNP HOH |
7.535 5.492 |
CZ2 CZ3 |
O1G O |
||
| TRP | D:97 | E:597 | 0.0 | 0.0 | I | -65.8 | -63.4 | NA | NA | NA | |||||||||||||
| TRP | F:97 | F:597 | 0.0 | 0.0 | I | -67.2 | -63.3 | NA | NA | NA | |||||||||||||
| 7s0y | 2 | P60953 | 99.43 | 8e-129 |
X-RAY |
2021-09-08 | TRP | B:98 | B:97 | 0.0 | 0.0 | I | -75.6 | -48.2 | 0.0 | 0.0 | 0.0 |
GDP SO4 HOH |
8.635 7.069 9.653 |
CZ2 CZ2 CH2 |
O3B O1 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p60953-f1 | 1 | P60953 | 100.0 | 8e-142 | TRP | A:97 | A:97 | 0.0 | 0.0 | I | -68.6 | -47.1 | |