Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 22413219 . C A CCDS221.1:NM_001039802.1:c.346Caa>Aaa_NP_001034891.1:p.116Q>K Homo sapiens cell division cycle 42 (CDC42), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2odb 1 P60953 100.0 1e-141 X-RAY
 2007-01-30 GLN A:117 A:116 52.0 0.289 60.3 42.2 52.0 0.289 0.0 GCP
HOH
 3.238
4.302
 NE2
CG
 O4'
O
5c2j 2 P60766 100.0 1e-141 X-RAY
 2016-06-22 GLN B:123 B:116 54.0 0.3 52.8 50.1 54.0 0.3 0.0 GDP
AF3
HOH
 2.993
9.864
2.858
 NE2
NE2
N
 O4'
F1
O
2dfk 2 P60953 100.0 1e-141 X-RAY
 2006-05-02 GLN B:119 B:116 51.0 0.283 65.3 34.5 51.0 0.283 0.0 SO4
HOH
 6.512
2.985
 NE2
N
 O1
O
GLN D:119 D:116 56.0 0.311 60.4 34.8 NA NA NA
1grn 1 P60953 100.0 2e-141 X-RAY
 1999-12-22 GLN A:116 A:116 50.0 0.278 55.6 45.7 50.0 0.278 0.0 GDP
AF3
HOH
 3.435
9.699
2.830
 CA
NE2
N
 O6
F1
O
2ngr 1 P60953 100.0 2e-141 X-RAY
 1999-01-06 GLN A:116 A:116 53.0 0.294 55.7 45.5 50.0 0.278 0.016 B:Q07960:0.017
 GDP
AF3
HOH
 3.561
9.735
2.834
 CG
NE2
N
 C5
F1
O
4itr 2 P60953 100.0 2e-141 X-RAY
 2013-02-20 GLN C:116 C:116 52.0 0.289 56.2 44.9 52.0 0.289 0.0 GDP
MG
SO4
HOH
 3.478
9.872
9.752
2.810
 NE2
NE2
OE1
N
 C8
MG
O1
O
GLN D:116 D:116 56.0 0.311 56.0 39.4 56.0 0.311 0.0 GDP
MG
SO4
HOH
 3.247
9.891
9.964
2.847
 OE1
NE2
OE1
N
 N3
MG
O3
O
6siu 2 P60953 100.0 3e-141 X-RAY
 2020-03-18 GLN C:117 C:116 46.0 0.256 61.3 54.6 46.0 0.256 0.0 GDP
SO4
HOH
 3.211
9.329
2.512
 NE2
OE1
OE1
 O4'
O2
O
GLN D:117 D:116 54.0 0.3 62.1 57.0 54.0 0.3 0.0 GDP
SO4
HOH
 3.231
8.728
2.695
 NE2
OE1
N
 N9
O2
O
5fi1 2 P60953 100.0 3e-141 X-RAY
 2016-04-20 GLN B:119 B:116 57.0 0.317 57.8 45.0 57.0 0.317 0.0
1an0 1 P60953 100.0 1e-140 X-RAY
 1999-01-13 GLN A:116 A:116 48.0 0.267 65.5 30.8 48.0 0.267 0.0 MG
GDP
HOH
 9.975
3.326
4.570
 NE2
CG
CG
 MG
C5
O
GLN B:116 B:116 43.0 0.239 52.4 31.7 43.0 0.239 0.0 MG
GDP
HOH
 9.724
3.567
3.270
 NE2
CG
N
 MG
C5
O
1a4r 1 P60953 99.48 4e-140 X-RAY
 1999-03-02 GLN A:116 A:116 52.0 0.289 60.8 40.2 52.0 0.289 0.0 MG
GDP
HOH
 9.714
3.401
2.859
 NE2
NE2
N
 MG
O4'
O
GLN B:116 B:316 46.0 0.256 61.7 39.1 46.0 0.256 0.0 GNH
 3.288
 CA
 O6
2qrz 1 P60953 100.0 4e-140 X-RAY
 2008-03-18 GLN A:116 A:116 49.0 0.272 58.0 37.5 49.0 0.272 0.0 GCP
HOH
 3.405
2.871
 NE2
N
 O4'
O
GLN B:116 B:116 49.0 0.272 53.9 40.7 49.0 0.272 0.0 GCP
HOH
 3.275
2.583
 OE1
N
 O4'
O
2wm9 2 P60953 100.0 1e-139 X-RAY
 2009-09-22 GLN B:118 B:116 57.0 0.317 50.6 35.4 57.0 0.317 0.0 GOL
HOH
 5.950
3.074
 NE2
N
 O2
O
2wmn 2 P60953 100.0 1e-139 X-RAY
 2009-09-22 GLN B:118 B:116 54.0 0.3 52.8 32.6 54.0 0.3 0.0 GDP
HOH
 3.302
2.886
 NE2
N
 O4'
O
2wmo 2 P60953 100.0 1e-139 X-RAY
 2009-09-22 GLN B:118 B:116 55.0 0.306 61.2 38.3 55.0 0.306 0.0 GTP
MG
HOH
 3.319
9.884
2.924
 NE2
NE2
OE1
 O4'
MG
O
1nf3 1 P60953 98.95 1e-139 X-RAY
 2003-03-04 GLN A:120 A:116 49.0 0.272 51.7 36.5 49.0 0.272 0.0 GNP
HOH
 3.506
2.928
 CG
N
 C5
O
GLN B:120 B:116 54.0 0.3 44.6 35.3 NA NA NA
1doa 1 P60953 100.0 1e-139 X-RAY
 2000-02-09 GLN A:119 A:116 64.0 0.356 60.4 73.1 64.0 0.356 0.0 GDP
 2.991
 OE1
 C4
6tky 2 P60953 100.0 2e-139 X-RAY
 2020-01-22 GLN B:116 C:116 56.0 0.311 59.9 38.5 NA NA NA
GLN C:116 D:116 55.0 0.306 62.9 26.3 55.0 0.306 0.0 GOL
HOH
 6.987
2.863
 NE2
N
 C1
O
6tkz 2 P60953 100.0 2e-139 X-RAY
 2020-01-22 GLN B:116 C:116 50.0 0.278 60.5 42.4 NA NA NA
GLN C:116 D:116 59.0 0.328 57.6 37.1 59.0 0.328 0.0 GDP
HOH
 3.157
4.665
 NE2
N
 O4'
O
6aj4 2 P60953 100.0 1e-138 X-RAY
 2019-03-20 GLN B:123 B:116 64.0 0.356 57.0 44.2 64.0 0.356 0.0
GLN D:123 D:116 53.0 0.294 61.8 36.1 NA NA NA
GLN F:123 F:116 57.0 0.317 66.7 31.5 NA NA NA
GLN H:123 H:116 63.0 0.35 56.5 36.7 NA NA NA
6ajl 2 P60953 100.0 1e-138 X-RAY
 2019-03-20 GLN B:123 B:116 62.0 0.344 61.6 39.0 62.0 0.344 0.0
GLN D:123 D:116 63.0 0.35 48.6 49.1 NA NA NA
GLN F:123 F:116 53.0 0.294 65.9 35.5 NA NA NA
GLN H:123 H:116 54.0 0.3 73.8 29.1 NA NA NA
1ki1 1 P60953 100.0 1e-138 X-RAY
 2002-05-29 GLN A:116 A:116 57.0 0.317 54.2 38.3 57.0 0.317 0.0 SO4
HOH
 6.246
2.591
 NE2
OE1
 O3
O
GLN C:116 C:116 58.0 0.322 54.2 38.3 NA NA NA
1kz7 2 P60953 100.0 1e-138 X-RAY
 2002-03-20 GLN B:116 B:116 52.0 0.289 54.8 41.4 52.0 0.289 0.0 HOH
 2.754
 N
 O
GLN D:116 D:1116 56.0 0.311 55.3 39.2 NA NA NA
1kzg 2 P60953 100.0 1e-138 X-RAY
 2002-03-20 GLN B:116 B:116 53.0 0.294 58.5 37.8 53.0 0.294 0.0 HOH
 3.093
 N
 O
GLN D:116 D:1116 52.0 0.289 56.8 41.3 NA NA NA
3vhl 2 P60953 99.47 6e-138 X-RAY
 2012-06-20 GLN B:123 B:116 56.0 0.311 56.6 41.5 56.0 0.311 0.0 PO4
HOH
 6.308
3.161
 NE2
N
 O1
O
4did 1 P60953 100.0 2e-135 X-RAY
 2012-02-29 GLN A:126 A:116 57.0 0.317 59.2 45.3 57.0 0.317 0.0 GDP
HOH
 2.908
2.918
 NE2
N
 O4'
O
1e0a 1 P60953 99.46 1e-134 NMR
 2000-04-18 GLN A:116 A:116 13.0 0.072 177.3 71.4 13.0 0.072 0.0 GNP
 4.236
 HG3
 H5'2
5hzk 1 P60953 96.79 3e-134 X-RAY
 2016-12-21 GLN A:118 A:116 56.0 0.311 58.8 41.7 56.0 0.311 0.0 GDP
 3.069
 NE2
 N9
GLN C:118 C:116 60.0 0.333 58.2 42.5 NA NA NA
4yc7 2 P60953 99.44 1e-131 X-RAY
 2015-05-13 GLN B:118 A:115 52.0 0.289 64.0 34.5 52.0 0.289 0.0 GNP
MG
HOH
 3.385
9.976
3.023
 NE2
NE2
N
 O4'
MG
O
4ydh 2 P60953 99.44 1e-131 X-RAY
 2015-05-13 GLN B:118 B:116 63.0 0.35 62.1 55.3 63.0 0.35 0.0 GNP
 2.922
 NE2
 C4
GLN D:118 D:116 62.0 0.344 58.8 51.4 62.0 0.344 0.0 GNP
 3.068
 CG
 C6
1gzs 1 P25763 100.0 3e-131 X-RAY
 2002-09-12 GLN A:118 A:116 50.0 0.278 52.9 37.8 50.0 0.278 0.0 SO4
SO4
HOH
 5.842
8.307
2.940
 NE2
OE1
N
 O1
O1
O
GLN C:118 C:116 60.0 0.333 51.1 42.7 NA NA NA
3eg5 1 P60766 99.44 6e-131 X-RAY
 2008-10-14 GLN A:116 A:116 56.0 0.311 56.2 37.4 56.0 0.311 0.0 GNP
HOH
 3.125
4.470
 NE2
CG
 O4'
O
GLN C:116 C:116 56.0 0.311 56.5 37.9 56.0 0.311 0.0 GNP
HOH
 3.087
4.500
 NE2
CG
 O4'
O
5upl 2 P60953 100.0 1e-130 X-RAY
 2017-12-27 GLN B:116 B:116 60.0 0.333 41.6 54.7 60.0 0.333 0.0
3gcg 1 P60953 100.0 6e-130 X-RAY
 2009-07-21 GLN A:120 A:116 57.0 0.317 50.7 40.1 57.0 0.317 0.0 HOH
 2.807
 N
 O
4js0 1 P60953 99.44 6e-130 X-RAY
 2014-03-05 GLN A:116 A:116 53.0 0.294 62.1 33.2 53.0 0.294 0.0 GNP
MG
PE4
HOH
 2.733
9.609
4.855
1.978
 HG2
HE21
OE1
H
 C5
MG
C2
O
3qbv 1 P60953 99.44 6e-130 X-RAY
 2012-02-08 GLN A:116 A:116 52.0 0.289 59.8 37.1 52.0 0.289 0.0 GDP
HOH
 3.473
4.542
 CG
CG
 C5
O
GLN C:116 C:116 57.0 0.317 60.7 36.2 NA NA NA
5cjp 1 A0A024RAE4 99.44 3e-129 X-RAY
 2016-08-10 GLN A:118 A:116 54.0 0.3 67.1 26.3 30.0 0.167 0.133 E:Q13576:0.133
 GTP
HOH
 3.259
2.759
 CG
N
 C5
O
GLN B:118 B:116 51.0 0.283 62.8 33.6 26.0 0.144 0.139 F:Q13576:0.139
 GTP
HOH
 3.391
2.662
 CG
N
 C5
O
GLN C:118 C:116 57.0 0.317 54.5 30.0 57.0 0.317 0.0 GTP
HOH
 3.260
2.910
 CG
NE2
 C5
O
GLN D:118 D:116 54.0 0.3 51.6 30.4 54.0 0.3 0.0 GTP
HOH
 3.405
6.424
 CG
C
 C5
O
5upk 3 P60953 98.87 4e-129 X-RAY
 2017-12-27 GLN C:116 C:116 56.0 0.311 59.1 40.0 56.0 0.311 0.0 GNP
HOH
 3.148
8.685
 NE2
NE2
 N9
O
1am4 2 P60953 99.43 7e-129 X-RAY
 1998-07-15 GLN B:116 D:616 56.0 0.311 68.9 47.8 56.0 0.311 0.0 GNP
HOH
 3.377
4.596
 NE2
N
 N9
O
GLN D:116 E:616 56.0 0.311 67.9 47.0 NA NA NA
GLN F:116 F:616 55.0 0.306 69.7 48.3 NA NA NA
7s0y 2 P60953 99.43 8e-129 X-RAY
 2021-09-08 GLN B:117 B:116 56.0 0.311 67.8 35.3 56.0 0.311 0.0 GDP
SO4
HOH
 2.777
8.935
7.351
 NE2
OE1
O
 O4'
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p60953-f1 1 P60953 100.0 8e-142 GLN A:116 A:116 47.0 0.261 63.0 35.4