Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 23403829 . C A CCDS30627.1:NM_015013.3:c.1771Cga>Aga_NP_055828.2:p.591R>R Homo sapiens lysine demethylase 1A (KDM1A), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3zmu 1 O60341 99.54 0.0 X-RAY
2013-06-12 ARG A:611 A:591 112.0 0.498 E -105.8 -32.6 112.0 0.498 0.0 FAD
5.270
N
N6A
3zmv 1 O60341 99.54 0.0 X-RAY
2013-06-12 ARG A:611 A:591 126.0 0.56 E -98.1 -33.4 126.0 0.56 0.0 FAD
5.520
N
N6A
3zms 1 O60341 99.43 0.0 X-RAY
2013-06-12 ARG A:611 A:591 116.0 0.516 E -110.3 -33.8 116.0 0.516 0.0 FAD
5.248
N
N6A
3zmt 1 O60341 99.43 0.0 X-RAY
2013-06-12 ARG A:611 A:591 114.0 0.507 E -109.3 -30.4 114.0 0.507 0.0 FAD
5.231
N
N6A
3zmz 1 O60341 99.43 0.0 X-RAY
2013-06-12 ARG A:611 A:591 115.0 0.511 E -107.7 -32.3 115.0 0.511 0.0 FAD
5.308
N
N6A
3zn0 1 O60341 99.43 0.0 X-RAY
2013-06-12 ARG A:611 A:591 113.0 0.502 E -112.1 -33.5 113.0 0.502 0.0 FAD
5.396
N
N6A
3zn1 1 O60341 99.43 0.0 X-RAY
2013-06-12 ARG A:611 A:591 115.0 0.511 E -112.2 -32.0 115.0 0.511 0.0 FAD
5.342
N
N6A
4czz 1 O60341 99.43 0.0 X-RAY
2014-06-11 ARG A:611 A:591 117.0 0.52 E -106.6 -30.7 117.0 0.52 0.0 FAD
5.323
N
N6A
4uv8 1 O60341 99.43 0.0 X-RAY
2014-09-10 ARG A:611 A:591 112.0 0.498 E -114.7 -33.7 112.0 0.498 0.0 D69
5.237
N
N6A
4uv9 1 O60341 99.43 0.0 X-RAY
2014-09-10 ARG A:611 A:591 114.0 0.507 E -111.6 -29.8 114.0 0.507 0.0 D70
5.181
N
N6A
4uva 1 O60341 99.43 0.0 X-RAY
2014-09-10 ARG A:611 A:591 113.0 0.502 E -112.8 -32.5 113.0 0.502 0.0 D73
5.283
N
N6A
4uvb 1 O60341 99.43 0.0 X-RAY
2014-09-10 ARG A:611 A:591 114.0 0.507 E -114.7 -33.4 114.0 0.507 0.0 D51
5.232
N
N6A
4uvc 1 O60341 99.43 0.0 X-RAY
2014-09-10 ARG A:611 A:591 122.0 0.542 E -110.3 -27.9 122.0 0.542 0.0 D52
5.428
N
N6A
6tuy 1 O60341 94.98 0.0 X-RAY
2021-07-21 ARG A:591 A:591 114.0 0.507 E -122.4 -37.0 114.0 0.507 0.0 FAD
HOH
5.196
3.831
N
O
N6A
O
2xaf 1 O60341 94.98 0.0 X-RAY
2010-05-05 ARG A:591 A:591 114.0 0.507 E -120.2 -31.8 114.0 0.507 0.0 FAD
5.399
N
N6A
2xag 1 O60341 94.98 0.0 X-RAY
2010-05-05 ARG A:591 A:591 119.0 0.529 E -125.9 -34.1 119.0 0.529 0.0 FAD
5.320
N
N6A
2xah 1 O60341 94.98 0.0 X-RAY
2010-05-05 ARG A:591 A:591 115.0 0.511 E -118.4 -29.1 115.0 0.511 0.0 FAD
5.552
N
N6A
2xaj 1 O60341 94.98 0.0 X-RAY
2010-05-05 ARG A:591 A:591 117.0 0.52 E -119.5 -29.2 117.0 0.52 0.0 FAD
5.515
N
N6A
2xaq 1 O60341 94.98 0.0 X-RAY
2010-05-05 ARG A:591 A:591 118.0 0.524 E -104.5 -62.5 118.0 0.524 0.0 FAD
5.608
N
N1A
2xas 1 O60341 94.98 0.0 X-RAY
2010-05-05 ARG A:591 A:591 119.0 0.529 E -125.5 -32.6 119.0 0.529 0.0 FAD
5.342
N
N6A
4uxn 1 O60341 94.98 0.0 X-RAY
2015-02-25 ARG A:591 A:591 118.0 0.524 E -122.7 -29.4 118.0 0.524 0.0 FAD
5.345
N
N6A
5lhg 1 O60341 94.98 0.0 X-RAY
2017-02-22 ARG A:591 A:591 120.0 0.533 E -111.3 -25.2 120.0 0.533 0.0 FAD
HOH
5.649
7.857
N
NH1
N6A
O
5lhh 1 O60341 94.98 0.0 X-RAY
2017-02-22 ARG A:591 A:591 115.0 0.511 E -109.6 -28.1 115.0 0.511 0.0 FAD
HOH
5.589
7.525
N
CD
N6A
O
5lhi 1 O60341 94.98 0.0 X-RAY
2017-02-22 ARG A:591 A:591 120.0 0.533 E -99.0 -16.8 120.0 0.533 0.0 FAD
5.588
N
N6A
6te1 1 O60341 94.98 0.0 X-RAY
2020-06-03 ARG A:591 A:591 110.0 0.489 E -114.4 -31.5 110.0 0.489 0.0 FAD
5.466
N
N6A
5l3c 1 O60341 94.86 0.0 X-RAY
2016-05-04 ARG A:591 A:591 122.0 0.542 E -104.4 -22.0 122.0 0.542 0.0 FAD
5.491
N
N6A
5l3d 1 O60341 94.86 0.0 X-RAY
2016-05-04 ARG A:591 A:591 110.0 0.489 E -114.7 -30.5 110.0 0.489 0.0 FAD
HOH
5.271
7.118
N
N
N6A
O
5l3b 1 O60341 94.86 0.0 X-RAY
2016-05-04 ARG A:591 A:591 121.0 0.538 E -110.1 -26.9 121.0 0.538 0.0 FAD
5.434
N
N6A
2x0l 1 O60341 100.0 0.0 X-RAY
2010-03-02 ARG A:473 A:591 111.0 0.493 E -116.7 -28.8 111.0 0.493 0.0 FAD
5.307
N
N6A
4bay 1 O60341 99.85 0.0 X-RAY
2013-11-27 ARG A:425 A:591 112.0 0.498 E -102.7 -38.0 112.0 0.498 0.0 FAD
5.304
N
N6A
2v1d 1 O60341 99.42 0.0 X-RAY
2007-05-29 ARG A:469 A:591 114.0 0.507 E -121.6 -28.5 114.0 0.507 0.0 FAD
5.553
N
N6A
2y48 1 O60341 99.42 0.0 X-RAY
2011-02-16 ARG A:469 A:591 115.0 0.511 E -117.9 -30.5 115.0 0.511 0.0 FAD
5.432
N
N6A
5l3e 1 O60341 99.42 0.0 X-RAY
2016-09-21 ARG A:469 A:591 112.0 0.498 E -115.9 -30.8 112.0 0.498 0.0 FAD
5.205
N
N6A
5l3f 1 O60341 99.42 0.0 X-RAY
2016-09-21 ARG A:469 A:591 120.0 0.533 E -120.7 -10.9 120.0 0.533 0.0 FAD
5.642
N
N6A
5l3g 1 O60341 99.42 0.0 X-RAY
2016-09-21 ARG A:469 A:591 112.0 0.498 E -105.2 -40.9 112.0 0.498 0.0 FAD
5.183
N
N6A
5lbq 1 O60341 99.42 0.0 X-RAY
2016-09-21 ARG A:469 A:591 122.0 0.542 E -117.4 -16.4 122.0 0.542 0.0 FAD
5.295
N
N6A
5lgt 1 O60341 99.42 0.0 X-RAY
2017-02-22 ARG A:469 A:591 120.0 0.533 E -117.1 -16.3 120.0 0.533 0.0 FAD
5.325
N
N6A
5lgu 1 O60341 99.42 0.0 X-RAY
2017-02-22 ARG A:469 A:591 117.0 0.52 E -116.4 -30.7 117.0 0.52 0.0 FAD
5.412
N
N6A
6vyp 7 O60341 98.69 0.0 X-RAY
2020-05-27 ARG S:423 M:591 139.0 0.618 E -104.7 -48.7 139.0 0.618 0.0 FAD
5.854
N
N1A
ARG U:423 m:591 120.0 0.533 E -104.4 -48.3 NA NA NA
ARG W:423 K:591 114.0 0.507 E -99.3 -65.3 114.0 0.507 0.0 FAD
6.283
N
N6A
ARG Y:423 k:591 116.0 0.516 E -97.5 -57.8 NA NA NA
5lgn 1 O60341 99.85 0.0 X-RAY
2017-02-22 ARG A:425 A:595 117.0 0.52 E -120.4 -26.5 117.0 0.52 0.0 FAD
5.467
N
N6A
2iw5 1 O60341 99.4 0.0 X-RAY
2006-08-09 ARG A:421 A:591 105.0 0.467 E -112.1 -34.6 105.0 0.467 0.0 FAD
HOH
5.379
4.094
N
O
N6A
O
2uxn 1 O60341 99.4 0.0 X-RAY
2007-05-29 ARG A:421 A:591 107.0 0.476 E -112.9 -40.8 107.0 0.476 0.0 FDA
HOH
5.498
7.474
N
O
N6A
O
2uxx 1 O60341 99.4 0.0 X-RAY
2007-08-21 ARG A:421 A:591 101.0 0.449 E -110.9 -39.0 101.0 0.449 0.0 FAJ
5.395
N
N9
4kum 1 O60341 99.4 0.0 X-RAY
2014-05-07 ARG A:421 A:591 104.0 0.462 E -113.0 -32.4 104.0 0.462 0.0 FAD
5.375
N
N6A
4xbf 1 O60341 99.4 0.0 X-RAY
2016-04-27 ARG A:421 A:591 113.0 0.502 E -119.9 -31.8 40.0 0.178 0.324 A:O60341:0.324
FAD
4.700
N
H62A
6wc6 1 O60341 99.4 0.0 X-RAY
2021-06-30 ARG A:421 A:591 110.0 0.489 E -110.1 -32.3 86.0 0.382 0.107 C:O60341:0.107
FAD
5.570
N
N6A
2h94 1 O60341 99.4 0.0 X-RAY
2006-07-04 ARG A:420 A:591 135.0 0.6 E -118.4 -0.2 135.0 0.6 0.0 FAD
5.629
N
N6A
2hko 1 O60341 99.25 0.0 X-RAY
2006-08-29 ARG A:420 A:591 145.0 0.644 E -117.6 -26.5 145.0 0.644 0.0 FAD
HOH
5.347
9.368
N
O
N6A
O
7e0g 1 O60341 99.1 0.0 X-RAY
2021-03-24 ARG A:423 A:591 94.0 0.418 E -123.7 -29.1 94.0 0.418 0.0 HUF
HOH
4.300
2.786
NH1
NE
N6
O
6s35 1 O60341 99.4 0.0 X-RAY
2020-02-26 ARG A:424 A:591 112.0 0.498 E -120.1 -32.1 112.0 0.498 0.0 FAD
5.316
N
N6A
5h6q 1 O60341 99.4 0.0 X-RAY
2017-04-12 ARG A:427 A:591 117.0 0.52 E -113.5 -34.7 117.0 0.52 0.0 FAD
5.222
N
N6A
5h6r 1 O60341 99.4 0.0 X-RAY
2017-04-12 ARG A:427 A:591 120.0 0.533 E -107.9 -34.4 120.0 0.533 0.0 FAD
HOH
5.274
4.179
N
O
N6A
O
5x60 1 O60341 99.4 0.0 X-RAY
2017-04-12 ARG A:427 A:591 116.0 0.516 E -108.9 -35.8 116.0 0.516 0.0 FAD
HOH
5.202
2.906
N
O
N6A
O
5yjb 1 O60341 99.4 0.0 X-RAY
2018-07-04 ARG A:427 A:591 117.0 0.52 E -111.9 -29.5 117.0 0.52 0.0 FAD
5.302
N
N6A
6kgk 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 117.0 0.52 E -106.6 -29.6 117.0 0.52 0.0 FAD
HOH
5.257
3.187
N
O
N6A
O
6kgl 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 115.0 0.511 E -108.8 -27.7 115.0 0.511 0.0 FAD
HOH
5.256
3.151
N
O
N6A
O
6kgm 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 119.0 0.529 E -111.1 -26.5 119.0 0.529 0.0 FAD
HOH
5.255
3.166
N
O
N6A
O
6kgn 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 119.0 0.529 E -111.4 -26.3 119.0 0.529 0.0 FAD
HOH
5.253
3.154
N
O
N6A
O
6kgo 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 97.0 0.431 E -113.4 -28.2 97.0 0.431 0.0 FAD
HOH
4.610
2.824
NH1
NE
N6A
O
6kgp 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 96.0 0.427 E -113.3 -28.9 96.0 0.427 0.0 FAD
HOH
4.591
2.851
NH1
NE
N6A
O
6kgq 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 98.0 0.436 E -116.3 -24.9 98.0 0.436 0.0 FAD
HOH
4.072
3.914
NH1
NH1
N6A
O
6kgr 1 O60341 99.4 0.0 X-RAY
2020-03-25 ARG A:427 A:591 98.0 0.436 E -116.6 -24.9 98.0 0.436 0.0 FAD
HOH
4.070
3.919
NH1
NH1
N6A
O
7cdc 1 O60341 99.4 0.0 X-RAY
2021-06-23 ARG A:427 A:591 116.0 0.516 E -112.8 -38.3 116.0 0.516 0.0 FAD
HOH
5.270
7.506
N
O
N6A
O
7cdd 1 O60341 99.4 0.0 X-RAY
2021-06-23 ARG A:427 A:591 116.0 0.516 E -114.1 -41.9 116.0 0.516 0.0 FAD
HOH
5.330
8.868
N
O
N6A
O
7cde 1 O60341 99.4 0.0 X-RAY
2021-06-23 ARG A:427 A:591 114.0 0.507 E -113.9 -37.7 114.0 0.507 0.0 FAD
HOH
5.316
2.951
N
O
N6A
O
7cdf 1 O60341 99.4 0.0 X-RAY
2021-06-23 ARG A:427 A:591 115.0 0.511 E -110.6 -37.5 115.0 0.511 0.0 FAD
HOH
5.333
2.777
N
O
N6A
O
7cdg 1 O60341 99.4 0.0 X-RAY
2021-06-23 ARG A:427 A:591 118.0 0.524 E -114.0 -38.5 118.0 0.524 0.0 FAD
HOH
5.348
8.831
N
O
N6A
O
2ejr 1 O60341 99.4 0.0 X-RAY
2008-01-01 ARG A:420 A:591 97.0 0.431 E -116.0 -22.6 97.0 0.431 0.0 F2N
HOH
4.315
2.935
NH1
NE
N6
O
2z3y 1 O60341 99.4 0.0 X-RAY
2008-01-01 ARG A:420 A:591 97.0 0.431 E -118.9 -25.6 97.0 0.431 0.0 F2N
HOH
4.305
3.034
NH1
NE
N6
O
2z5u 1 O60341 99.4 0.0 X-RAY
2008-04-01 ARG A:420 A:591 97.0 0.431 E -117.4 -23.3 97.0 0.431 0.0 FAJ
HOH
5.262
3.180
N
NE
N9
O
3abt 1 O60341 99.4 0.0 X-RAY
2010-07-07 ARG A:420 A:591 96.0 0.427 E -115.8 -8.3 96.0 0.427 0.0 2PF
4.395
NH1
NAO
3abu 1 O60341 99.4 0.0 X-RAY
2010-07-07 ARG A:420 A:591 98.0 0.436 E -116.1 -14.0 98.0 0.436 0.0 12F
4.142
NH1
NBV
6k3e 1 O60341 99.4 0.0 X-RAY
2020-05-20 ARG A:420 A:591 111.0 0.493 E -113.0 -35.3 111.0 0.493 0.0 D3U
5.631
N
N1
2dw4 1 O60341 99.4 0.0 X-RAY
2007-09-04 ARG A:420 A:591 98.0 0.436 E -131.0 -18.5 98.0 0.436 0.0 FAD
HOH
4.125
2.742
NH1
NE
N6A
O
6w4k 1 O60341 99.4 0.0 X-RAY
2020-10-21 ARG A:418 A:591 116.0 0.516 E -110.3 -32.5 116.0 0.516 0.0 FAD
HOH
5.303
6.922
N
CD
N6A
O
6nqm 1 O60341 99.4 0.0 X-RAY
2019-02-13 ARG A:419 A:591 139.0 0.618 E -123.7 -16.7 139.0 0.618 0.0 FAD
4.573
HA
H61A
6nqu 1 O60341 99.4 0.0 X-RAY
2019-02-13 ARG A:419 A:591 129.0 0.573 E -123.6 -18.1 129.0 0.573 0.0 KWM
5.107
N
N9
6nr5 1 O60341 99.4 0.0 X-RAY
2019-07-17 ARG A:419 A:591 116.0 0.516 E -119.3 -16.8 116.0 0.516 0.0 KXM
5.659
N
N7

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o60341-f1 1 O60341 94.98 0.0 ARG A:591 A:591 127.0 0.564 E -125.9 -31.5