Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 23405599 . C A CCDS30627.1:NM_015013.3:c.1912Cag>Aag_NP_055828.2:p.638Q>K Homo sapiens lysine demethylase 1A (KDM1A), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3zmu 1 O60341 99.54 0.0 X-RAY
 2013-06-12 GLN A:658 A:638 103.0 0.572 E -104.4 135.3 103.0 0.572 0.0 FAD
 7.994
 N
 N6A
3zmv 1 O60341 99.54 0.0 X-RAY
 2013-06-12 GLN A:658 A:638 109.0 0.606 E -110.4 136.2 109.0 0.606 0.0 FAD
 7.908
 N
 N6A
3zms 1 O60341 99.43 0.0 X-RAY
 2013-06-12 GLN A:658 A:638 99.0 0.55 E -98.2 133.3 99.0 0.55 0.0 FAD
 8.059
 N
 N6A
3zmt 1 O60341 99.43 0.0 X-RAY
 2013-06-12 GLN A:658 A:638 107.0 0.594 E -101.2 137.9 107.0 0.594 0.0 FAD
 8.098
 N
 N6A
3zmz 1 O60341 99.43 0.0 X-RAY
 2013-06-12 GLN A:658 A:638 105.0 0.583 E -100.2 132.6 105.0 0.583 0.0 FAD
 7.949
 N
 N6A
3zn0 1 O60341 99.43 0.0 X-RAY
 2013-06-12 GLN A:658 A:638 103.0 0.572 E -96.0 132.3 103.0 0.572 0.0 FAD
 8.073
 N
 N6A
3zn1 1 O60341 99.43 0.0 X-RAY
 2013-06-12 GLN A:658 A:638 98.0 0.544 E -100.7 132.9 98.0 0.544 0.0 FAD
 7.980
 N
 N6A
4czz 1 O60341 99.43 0.0 X-RAY
 2014-06-11 GLN A:658 A:638 102.0 0.567 E -101.4 130.5 102.0 0.567 0.0 FAD
 8.078
 N
 N6A
4uv8 1 O60341 99.43 0.0 X-RAY
 2014-09-10 GLN A:658 A:638 106.0 0.589 E -95.8 137.4 106.0 0.589 0.0 D69
 8.063
 N
 N6A
4uv9 1 O60341 99.43 0.0 X-RAY
 2014-09-10 GLN A:658 A:638 104.0 0.578 E -103.3 131.3 104.0 0.578 0.0 D70
 7.796
 N
 N6A
4uva 1 O60341 99.43 0.0 X-RAY
 2014-09-10 GLN A:658 A:638 105.0 0.583 E -96.7 138.0 105.0 0.583 0.0 D73
 8.046
 N
 N6A
4uvb 1 O60341 99.43 0.0 X-RAY
 2014-09-10 GLN A:658 A:638 107.0 0.594 E -97.7 137.7 107.0 0.594 0.0 D51
 8.061
 N
 N6A
4uvc 1 O60341 99.43 0.0 X-RAY
 2014-09-10 GLN A:658 A:638 105.0 0.583 E -98.6 135.5 105.0 0.583 0.0 D52
 8.097
 N
 N6A
6tuy 1 O60341 94.98 0.0 X-RAY
 2021-07-21 GLN A:638 A:638 100.0 0.556 E -97.5 138.6 100.0 0.556 0.0 FAD
HOH
 8.237
4.303
 N
N
 N6A
O
2xaf 1 O60341 94.98 0.0 X-RAY
 2010-05-05 GLN A:638 A:638 95.0 0.528 E -117.4 130.0 95.0 0.528 0.0 FAD
 8.182
 N
 N6A
2xag 1 O60341 94.98 0.0 X-RAY
 2010-05-05 GLN A:638 A:638 94.0 0.522 E -118.0 131.5 94.0 0.522 0.0 FAD
 8.094
 N
 N6A
2xah 1 O60341 94.98 0.0 X-RAY
 2010-05-05 GLN A:638 A:638 100.0 0.556 E -86.7 131.4 100.0 0.556 0.0 FAD
 8.039
 N
 N6A
2xaj 1 O60341 94.98 0.0 X-RAY
 2010-05-05 GLN A:638 A:638 92.0 0.511 E -109.2 131.6 92.0 0.511 0.0 FAD
 8.132
 N
 N6A
2xaq 1 O60341 94.98 0.0 X-RAY
 2010-05-05 GLN A:638 A:638 101.0 0.561 E -90.1 118.1 101.0 0.561 0.0 FAD
 8.296
 N
 N6A
2xas 1 O60341 94.98 0.0 X-RAY
 2010-05-05 GLN A:638 A:638 99.0 0.55 E -103.3 132.1 99.0 0.55 0.0 FAD
 8.156
 N
 N6A
4uxn 1 O60341 94.98 0.0 X-RAY
 2015-02-25 GLN A:638 A:638 96.0 0.533 E -110.0 135.1 96.0 0.533 0.0 FAD
 8.013
 N
 N6A
5lhg 1 O60341 94.98 0.0 X-RAY
 2017-02-22 GLN A:638 A:638 106.0 0.589 E -99.2 130.9 106.0 0.589 0.0 FAD
HOH
 8.008
4.831
 N
NE2
 N6A
O
5lhh 1 O60341 94.98 0.0 X-RAY
 2017-02-22 GLN A:638 A:638 107.0 0.594 E -98.0 129.4 107.0 0.594 0.0 FAD
HOH
 8.109
8.414
 N
N
 N6A
O
5lhi 1 O60341 94.98 0.0 X-RAY
 2017-02-22 GLN A:638 A:638 98.0 0.544 E -89.8 137.0 98.0 0.544 0.0 FAD
 8.108
 N
 N6A
6te1 1 O60341 94.98 0.0 X-RAY
 2020-06-03 GLN A:638 A:638 106.0 0.589 E -95.5 136.3 106.0 0.589 0.0 FAD
 8.058
 N
 N6A
5l3c 1 O60341 94.86 0.0 X-RAY
 2016-05-04 GLN A:638 A:638 108.0 0.6 E -106.5 131.4 108.0 0.6 0.0 FAD
 8.214
 N
 N6A
5l3d 1 O60341 94.86 0.0 X-RAY
 2016-05-04 GLN A:638 A:638 111.0 0.617 E -100.7 137.5 111.0 0.617 0.0 FAD
HOH
 8.188
5.575
 N
N
 N6A
O
5l3b 1 O60341 94.86 0.0 X-RAY
 2016-05-04 GLN A:638 A:638 105.0 0.583 E -102.0 135.2 105.0 0.583 0.0 FAD
 8.159
 N
 N6A
2x0l 1 O60341 100.0 0.0 X-RAY
 2010-03-02 GLN A:520 A:638 101.0 0.561 E -107.6 131.6 101.0 0.561 0.0 FAD
 8.207
 N
 N6A
4bay 1 O60341 99.85 0.0 X-RAY
 2013-11-27 GLN A:472 A:638 106.0 0.589 E -104.4 137.8 106.0 0.589 0.0 FAD
 7.967
 N
 N6A
2v1d 1 O60341 99.42 0.0 X-RAY
 2007-05-29 GLN A:516 A:638 100.0 0.556 E -111.8 125.8 100.0 0.556 0.0 FAD
 8.110
 N
 N6A
2y48 1 O60341 99.42 0.0 X-RAY
 2011-02-16 GLN A:516 A:638 106.0 0.589 E -102.0 131.1 106.0 0.589 0.0 FAD
 8.286
 N
 N6A
5l3e 1 O60341 99.42 0.0 X-RAY
 2016-09-21 GLN A:516 A:638 102.0 0.567 E -109.1 134.3 102.0 0.567 0.0 FAD
 8.078
 N
 N6A
5l3f 1 O60341 99.42 0.0 X-RAY
 2016-09-21 GLN A:516 A:638 105.0 0.583 E -105.1 139.8 105.0 0.583 0.0 FAD
 8.084
 N
 N6A
5l3g 1 O60341 99.42 0.0 X-RAY
 2016-09-21 GLN A:516 A:638 103.0 0.572 E -108.5 138.1 103.0 0.572 0.0 FAD
 8.010
 N
 N6A
5lbq 1 O60341 99.42 0.0 X-RAY
 2016-09-21 GLN A:516 A:638 110.0 0.611 E -113.1 137.0 110.0 0.611 0.0 FAD
 8.012
 N
 N6A
5lgt 1 O60341 99.42 0.0 X-RAY
 2017-02-22 GLN A:516 A:638 110.0 0.611 E -96.8 134.9 110.0 0.611 0.0 FAD
 8.379
 N
 N6A
5lgu 1 O60341 99.42 0.0 X-RAY
 2017-02-22 GLN A:516 A:638 102.0 0.567 E -110.4 133.9 102.0 0.567 0.0 FAD
 8.288
 N
 N6A
6vyp 7 O60341 98.69 0.0 X-RAY
 2020-05-27 GLN S:470 M:638 121.0 0.672 E -101.0 137.6 121.0 0.672 0.0 FAD
 8.243
 N
 N6A
GLN U:470 m:638 108.0 0.6 E -100.3 137.6 NA NA NA
GLN W:470 K:638 98.0 0.544 E -89.1 143.0 98.0 0.544 0.0 FAD
 8.916
 N
 N6A
GLN Y:470 k:638 106.0 0.589 E -93.2 129.4 NA NA NA
5lgn 1 O60341 99.85 0.0 X-RAY
 2017-02-22 GLN A:472 A:642 98.0 0.544 E -107.9 134.2 98.0 0.544 0.0 FAD
 8.250
 N
 N6A
2iw5 1 O60341 99.4 0.0 X-RAY
 2006-08-09 GLN A:468 A:638 107.0 0.594 E -99.8 135.4 107.0 0.594 0.0 FAD
HOH
 8.224
2.699
 N
OE1
 N6A
O
2uxn 1 O60341 99.4 0.0 X-RAY
 2007-05-29 GLN A:468 A:638 107.0 0.594 E -98.3 138.9 107.0 0.594 0.0 FDA
HOH
 8.593
3.196
 N
NE2
 N6A
O
2uxx 1 O60341 99.4 0.0 X-RAY
 2007-08-21 GLN A:468 A:638 109.0 0.606 E -94.8 133.6 109.0 0.606 0.0 FAJ
 8.242
 N
 N9
4kum 1 O60341 99.4 0.0 X-RAY
 2014-05-07 GLN A:468 A:638 103.0 0.572 E -106.0 134.2 103.0 0.572 0.0 FAD
 8.097
 N
 N6A
4xbf 1 O60341 99.4 0.0 X-RAY
 2016-04-27 GLN A:468 A:638 109.0 0.606 E -94.0 137.1 77.0 0.428 0.178 A:O60341:0.178
 FAD
U
U
HOH
 6.962
7.402
7.380
5.587
 H
HE22
HE21
HA
 H62A
O2'
OP2
O
6wc6 1 O60341 99.4 0.0 X-RAY
 2021-06-30 GLN A:468 A:638 108.0 0.6 E -103.2 131.4 108.0 0.6 0.0 FAD
 8.119
 N
 N6A
2h94 1 O60341 99.4 0.0 X-RAY
 2006-07-04 GLN A:467 A:638 112.0 0.622 E -113.8 146.3 112.0 0.622 0.0 FAD
 8.287
 N
 N6A
2hko 1 O60341 99.25 0.0 X-RAY
 2006-08-29 GLN A:467 A:638 113.0 0.628 E -95.7 127.7 113.0 0.628 0.0 FAD
HOH
 8.223
5.395
 N
C
 N6A
O
7e0g 1 O60341 99.1 0.0 X-RAY
 2021-03-24 GLN A:470 A:638 107.0 0.594 E -97.3 141.2 107.0 0.594 0.0 HUF
HOH
 8.291
3.678
 N
CA
 N6
O
6s35 1 O60341 99.4 0.0 X-RAY
 2020-02-26 GLN A:471 A:638 103.0 0.572 E -99.4 133.8 103.0 0.572 0.0 FAD
 7.917
 N
 N6A
5h6q 1 O60341 99.4 0.0 X-RAY
 2017-04-12 GLN A:474 A:638 110.0 0.611 E -108.5 136.3 110.0 0.611 0.0 FAD
HOH
 8.268
5.834
 N
C
 N6A
O
5h6r 1 O60341 99.4 0.0 X-RAY
 2017-04-12 GLN A:474 A:638 108.0 0.6 E -101.6 136.3 108.0 0.6 0.0 FAD
HOH
 8.119
2.687
 N
OE1
 N6A
O
5x60 1 O60341 99.4 0.0 X-RAY
 2017-04-12 GLN A:474 A:638 109.0 0.606 E -101.9 135.6 109.0 0.606 0.0 FAD
HOH
 8.102
2.644
 N
OE1
 N6A
O
5yjb 1 O60341 99.4 0.0 X-RAY
 2018-07-04 GLN A:474 A:638 112.0 0.622 E -100.4 131.6 112.0 0.622 0.0 FAD
 8.111
 N
 N6A
6kgk 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 106.0 0.589 E -94.8 135.2 106.0 0.589 0.0 FAD
HOH
 8.186
2.492
 N
OE1
 N6A
O
6kgl 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 107.0 0.594 E -95.2 134.7 107.0 0.594 0.0 FAD
HOH
 8.229
2.458
 N
OE1
 N6A
O
6kgm 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 105.0 0.583 E -102.4 134.5 105.0 0.583 0.0 FAD
HOH
 8.239
2.486
 N
OE1
 N6A
O
6kgn 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 106.0 0.589 E -102.4 134.4 106.0 0.589 0.0 FAD
HOH
 8.243
2.487
 N
OE1
 N6A
O
6kgo 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 104.0 0.578 E -101.6 130.1 104.0 0.578 0.0 FAD
HOH
 8.071
3.152
 N
NE2
 N6A
O
6kgp 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 104.0 0.578 E -101.7 130.1 104.0 0.578 0.0 FAD
HOH
 8.069
3.162
 N
NE2
 N6A
O
6kgq 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 105.0 0.583 E -97.1 134.7 105.0 0.583 0.0 FAD
HOH
 8.221
3.733
 N
CA
 N6A
O
6kgr 1 O60341 99.4 0.0 X-RAY
 2020-03-25 GLN A:474 A:638 105.0 0.583 E -96.9 134.7 105.0 0.583 0.0 FAD
HOH
 8.210
3.722
 N
CA
 N6A
O
7cdc 1 O60341 99.4 0.0 X-RAY
 2021-06-23 GLN A:474 A:638 110.0 0.611 E -98.3 134.7 110.0 0.611 0.0 FAD
HOH
 8.268
3.334
 N
NE2
 N6A
O
7cdd 1 O60341 99.4 0.0 X-RAY
 2021-06-23 GLN A:474 A:638 109.0 0.606 E -93.8 132.4 109.0 0.606 0.0 FAD
HOH
 8.272
3.320
 N
NE2
 N6A
O
7cde 1 O60341 99.4 0.0 X-RAY
 2021-06-23 GLN A:474 A:638 107.0 0.594 E -99.6 133.0 107.0 0.594 0.0 FAD
HOH
 8.180
3.203
 N
NE2
 N6A
O
7cdf 1 O60341 99.4 0.0 X-RAY
 2021-06-23 GLN A:474 A:638 107.0 0.594 E -96.8 131.7 107.0 0.594 0.0 FAD
HOH
 8.181
3.122
 N
NE2
 N6A
O
7cdg 1 O60341 99.4 0.0 X-RAY
 2021-06-23 GLN A:474 A:638 106.0 0.589 E -95.2 131.8 106.0 0.589 0.0 FAD
HOH
 8.201
3.088
 N
NE2
 N6A
O
2ejr 1 O60341 99.4 0.0 X-RAY
 2008-01-01 GLN A:467 A:638 106.0 0.589 E -105.2 143.6 106.0 0.589 0.0 F2N
HOH
 8.148
6.011
 N
N
 N6
O
2z3y 1 O60341 99.4 0.0 X-RAY
 2008-01-01 GLN A:467 A:638 109.0 0.606 E -101.8 141.0 109.0 0.606 0.0 F2N
HOH
 8.249
3.719
 N
CA
 N6
O
2z5u 1 O60341 99.4 0.0 X-RAY
 2008-04-01 GLN A:467 A:638 110.0 0.611 E -98.2 139.2 110.0 0.611 0.0 FAJ
HOH
 7.696
3.733
 N
CA
 N9
O
3abt 1 O60341 99.4 0.0 X-RAY
 2010-07-07 GLN A:467 A:638 106.0 0.589 E -103.5 133.0 106.0 0.589 0.0 2PF
 8.420
 N
 NAO
3abu 1 O60341 99.4 0.0 X-RAY
 2010-07-07 GLN A:467 A:638 107.0 0.594 E -98.8 143.9 107.0 0.594 0.0 12F
 8.203
 N
 NBV
6k3e 1 O60341 99.4 0.0 X-RAY
 2020-05-20 GLN A:467 A:638 101.0 0.561 E -102.6 132.1 101.0 0.561 0.0 D3U
EDO
HOH
 8.250
7.338
6.120
 N
NE2
C
 N6
O1
O
2dw4 1 O60341 99.4 0.0 X-RAY
 2007-09-04 GLN A:467 A:638 107.0 0.594 E -86.0 142.9 107.0 0.594 0.0 FAD
HOH
 8.416
3.422
 N
CG
 N6A
O
6w4k 1 O60341 99.4 0.0 X-RAY
 2020-10-21 GLN A:465 A:638 104.0 0.578 E -92.3 135.1 104.0 0.578 0.0 FAD
HOH
 8.287
8.670
 N
N
 N6A
O
6nqm 1 O60341 99.4 0.0 X-RAY
 2019-02-13 GLN A:466 A:638 113.0 0.628 E -101.0 138.5 113.0 0.628 0.0 FAD
 7.514
 H
 H61A
6nqu 1 O60341 99.4 0.0 X-RAY
 2019-02-13 GLN A:466 A:638 109.0 0.606 E -103.8 137.4 109.0 0.606 0.0 KWM
 8.156
 N
 N9
6nr5 1 O60341 99.4 0.0 X-RAY
 2019-07-17 GLN A:466 A:638 112.0 0.622 E -81.6 146.5 112.0 0.622 0.0 KXM
 8.534
 N
 N7

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o60341-f1 1 O60341 94.98 0.0 GLN A:638 A:638 111.0 0.617 E -90.5 129.6