Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 53699237 . G A CCDS577.1:NM_002370.3:c.235Cct>Tct_NP_002361.1:p.79P>S Homo sapiens mago homolog, exon junction complex core component (MAGOH), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2hyi 2 P61326 100.0 3e-106 X-RAY
 2006-08-15 PRO C:79 A:79 97.0 0.669 -76.0 152.7 97.0 0.669 0.0 HOH
 5.793
 O
 O
PRO G:79 G:79 96.0 0.662 -74.4 152.1 NA NA NA
2j0q 2 P61326 100.0 3e-106 X-RAY
 2006-08-30 PRO C:79 C:79 98.0 0.676 -81.3 146.8 98.0 0.676 0.0
PRO F:79 F:79 97.0 0.669 -81.1 147.4 NA NA NA
2j0s 2 P61326 100.0 3e-106 X-RAY
 2006-09-06 PRO B:79 C:79 93.0 0.641 -71.0 163.4 93.0 0.641 0.0 HOH
 2.710
 O
 O
2xb2 2 P61326 100.0 3e-106 X-RAY
 2010-05-12 PRO B:79 C:79 96.0 0.662 -77.1 152.1 NA NA NA
PRO L:79 Y:79 96.0 0.662 -76.0 151.2 96.0 0.662 0.0
3ex7 1 P61326 100.0 3e-106 X-RAY
 2008-12-09 PRO A:79 A:79 94.0 0.648 -76.3 161.7 94.0 0.648 0.0 HOH
 2.484
 O
 O
PRO E:79 E:79 95.0 0.655 -70.6 155.1 NA NA NA
7a5p 34 P61326 100.0 3e-106 EM
 2020-10-14 PRO RA:79 v:81 98.0 0.676 -72.0 158.2 98.0 0.676 0.0
5xjc 38 Q96A72 98.63 4e-105 EM
 2017-07-05 PRO VA:81 v:81 96.0 0.662 -76.0 152.7 96.0 0.662 0.0
5yzg 30 Q96A72 98.63 4e-105 EM
 2018-08-08 PRO GA:81 v:81 94.0 0.648 -76.0 152.7 94.0 0.648 0.0
6icz 1 Q96A72 98.63 4e-105 EM
 2019-03-13 PRO A:81 v:79 78.0 NA -75.9 152.6 78.0 NA NA
1p27 1 P61326 100.0 9e-105 X-RAY
 2003-08-19 PRO A:78 A:79 91.0 0.628 -64.4 160.4 91.0 0.628 0.0 HOH
 7.243
 C
 O
PRO C:78 C:79 93.0 0.641 -68.1 165.3 93.0 0.641 0.0 HOH
 6.926
 CD
 O
6qdv 6 Q96A72 100.0 1e-104 EM
 2019-02-20 PRO F:77 9:81 96.0 0.662 -75.9 152.7 96.0 0.662 0.0
1oo0 1 P49028 91.61 7e-96 X-RAY
 2003-05-27 PRO A:80 A:80 93.0 0.641 -78.2 163.5 93.0 0.641 0.0 MPD
HOH
 7.330
2.819
 C
O
 C5
O
1rk8 2 P49028 91.61 7e-96 X-RAY
 2004-04-13 PRO B:80 B:80 97.0 0.669 -75.3 167.0 97.0 0.669 0.0
2x1g 2 P49028 91.61 7e-96 X-RAY
 2010-02-16 PRO B:80 B:80 90.0 0.621 -68.4 175.8 90.0 0.621 0.0
PRO D:80 D:80 89.0 0.614 -68.4 175.8 NA NA NA
1hl6 2 P49028 91.61 9e-96 X-RAY
 2003-05-08 PRO B:80 B:80 86.0 0.593 -78.9 169.6 73.0 0.503 0.09 A:Q9V535:0.09
 HOH
 5.667
 O
 O
PRO D:80 D:80 97.0 0.669 -88.9 164.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61326-f1 1 P61326 100.0 1e-106 PRO A:79 A:79 96.0 0.662 -70.6 157.2
af-q96a72-f1 1 Q96A72 98.63 2e-105 PRO A:81 A:81 99.0 0.683 -68.0 155.6