Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76253276 . A C CCDS669.1:NM_004582.3:c.98aAg>aCg_NP_004573.2:p.33K>T Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 LYS B:34 NA:NA DO NA DO DO DO NA NA NA
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:38 B:33 140.0 0.7 S -71.6 125.0 140.0 0.7 0.0 MPD
 9.086
 O
 CM
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:38 B:33 178.0 0.89 S -70.8 119.8 178.0 0.89 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:38 B:33 179.0 0.895 S -73.2 129.1 179.0 0.895 0.0
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:38 B:33 177.0 0.885 S -84.5 111.2 177.0 0.885 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 LYS B:33 B:33 97.0 0.485 S -51.7 -42.2 97.0 0.485 0.0 HOH
 4.234
 O
 O
LYS D:33 D:33 75.0 0.375 T -33.8 -51.5 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:33 B:33 167.0 0.835 S -79.1 -39.0 167.0 0.835 0.0 HOH
 3.190
 N
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:33 B:33 87.0 NA -151.6 360.0 87.0 NA NA HOH
 3.202
 O
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:33 B:33 152.0 0.76 -58.8 -47.9 152.0 0.76 0.0 HOH
 3.362
 CD
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:33 B:33 105.0 NA -52.3 360.0 105.0 NA NA HOH
 5.116
 CB
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:33 B:33 86.0 NA 166.3 360.0 86.0 NA NA HOH
 5.618
 N
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:33 NA:NA DO NA DO DO DO NA NA NA
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LYS B:32 NA:NA DO NA DO DO DO NA NA NA
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LYS B:32 NA:NA DO NA DO DO DO NA NA NA
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LYS B:32 NA:NA DO NA DO DO DO NA NA NA
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 LYS B:32 NA:NA DO NA DO DO DO NA NA NA
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LYS B:32 NA:NA DO NA DO DO DO NA NA NA
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LYS B:32 NA:NA DO NA DO DO DO NA NA NA
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LYS B:32 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 LYS A:33 A:33 116.0 0.58 -85.1 60.6