Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76254923 . A C CCDS669.1:NM_004582.3:c.191cAt>cCt_NP_004573.2:p.64H>P Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 HIS B:65 B:64 147.0 0.754 G -59.7 -25.1 147.0 0.754 0.0 HOH
 2.787
 NE2
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 HIS B:69 B:64 142.0 0.728 G -71.7 -9.7 142.0 0.728 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 HIS B:69 B:64 145.0 0.744 G -70.3 -15.8 145.0 0.744 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 HIS B:69 B:64 141.0 0.723 G -65.6 -19.1 141.0 0.723 0.0
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 HIS B:69 B:64 146.0 0.749 G -68.1 -15.1 146.0 0.749 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 HIS B:64 B:64 150.0 0.769 G -61.1 -19.5 150.0 0.769 0.0 HOH
 4.327
 CA
 O
HIS D:64 D:64 148.0 0.759 G -61.4 -22.5 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 HIS B:64 B:64 143.0 0.733 G -70.3 -6.8 143.0 0.733 0.0
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 HIS B:64 B:64 141.0 0.723 G -53.1 -22.8 141.0 0.723 0.0 CA
HOH
 2.562
3.231
 O
O
 CA
O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 HIS B:64 B:64 144.0 0.738 G -57.5 -21.5 144.0 0.738 0.0 CA
HOH
 2.294
2.724
 O
ND1
 CA
O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 HIS B:64 B:64 144.0 0.738 G -55.8 -27.8 144.0 0.738 0.0 CA
HOH
 1.915
2.893
 O
ND1
 CA
O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 HIS B:64 B:64 143.0 0.733 G -56.9 -22.5 143.0 0.733 0.0 CA
HOH
 2.320
3.665
 O
N
 CA
O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 HIS B:64 B:64 145.0 0.744 G -60.6 -20.8 145.0 0.744 0.0 CA
HOH
 2.348
2.452
 O
ND1
 CA
O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 HIS B:64 B:64 144.0 0.738 G -59.3 -19.7 144.0 0.738 0.0 CA
HOH
 2.348
2.937
 O
O
 CA
O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 HIS B:64 B:64 142.0 0.728 G -56.2 -25.2 142.0 0.728 0.0 CA
HOH
 2.259
2.591
 O
ND1
 CA
O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 HIS B:64 B:64 141.0 0.723 G -55.2 -27.6 141.0 0.723 0.0 HOH
 2.386
 O
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 HIS B:64 B:64 144.0 0.738 G -56.6 -25.0 144.0 0.738 0.0 CA
HOH
 2.336
2.752
 O
ND1
 CA
O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 HIS B:64 B:64 144.0 0.738 G -60.3 -23.9 144.0 0.738 0.0 CA
HOH
 2.304
2.692
 O
NE2
 CA
O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 HIS B:64 B:64 143.0 0.733 G -58.5 -25.3 143.0 0.733 0.0 CA
HOH
 2.296
2.709
 O
ND1
 CA
O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 HIS B:64 B:64 143.0 0.733 G -64.1 -20.0 143.0 0.733 0.0 CA
HOH
 2.384
2.756
 O
ND1
 CA
O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 HIS B:63 B:64 144.0 0.738 G -56.8 -22.3 144.0 0.738 0.0 CA
HOH
 2.243
2.516
 O
ND1
 CA
O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 HIS B:63 B:64 138.0 0.708 G -60.4 -20.3 138.0 0.708 0.0 CA
HOH
 2.345
4.419
 O
O
 CA
O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 HIS B:63 B:64 141.0 0.723 G -57.1 -27.1 141.0 0.723 0.0 CA
HOH
 2.329
2.615
 O
ND1
 CA
O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 HIS B:63 B:64 140.0 0.718 G -53.4 -28.6 140.0 0.718 0.0 CA
HOH
 2.347
3.306
 O
O
 CA
O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 HIS B:63 B:64 145.0 0.744 G -54.4 -29.9 145.0 0.744 0.0 CA
HOH
 2.237
2.900
 O
CE1
 CA
O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 HIS B:63 B:64 144.0 0.738 G -55.4 -26.9 144.0 0.738 0.0 CA
HOH
 2.292
3.046
 O
ND1
 CA
O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 HIS B:63 B:64 143.0 0.733 G -60.8 -23.6 143.0 0.733 0.0 CA
HOH
 2.302
2.685
 O
ND1
 CA
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 HIS A:64 A:64 144.0 0.738 G -61.8 -17.0