Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76255673 . G A CCDS669.1:NM_004582.3:c.346Gta>Ata_NP_004573.2:p.116V>I Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 VAL B:117 B:116 22.0 0.142 H -62.7 -36.4 22.0 0.142 0.0 HOH
 7.696
 CG1
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 VAL B:121 B:116 27.0 0.174 H -64.0 -43.3 27.0 0.174 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 VAL B:121 B:116 26.0 0.168 H -61.5 -39.5 26.0 0.168 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 VAL B:121 B:116 27.0 0.174 H -64.0 -41.5 27.0 0.174 0.0
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 VAL B:121 B:116 25.0 0.161 H -63.6 -44.5 25.0 0.161 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 VAL B:116 B:116 26.0 0.168 H -79.1 -33.0 26.0 0.168 0.0 HOH
 2.843
 CG1
 O
VAL D:116 D:116 21.0 0.135 H -75.0 -38.6 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 VAL B:116 B:116 38.0 0.245 H -62.9 -30.7 38.0 0.245 0.0
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 VAL B:116 B:116 28.0 0.181 H -62.3 -36.1 28.0 0.181 0.0 HOH
 2.917
 N
 O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 VAL B:116 B:116 9.0 0.058 H -67.2 -43.7 9.0 0.058 0.0 HOH
 2.958
 N
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 VAL B:116 B:116 7.0 0.045 H -71.0 -39.2 7.0 0.045 0.0 HOH
 3.076
 N
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 VAL B:116 B:116 9.0 0.058 H -66.8 -44.1 9.0 0.058 0.0 HOH
 3.014
 N
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 VAL B:116 B:116 27.0 0.174 H -68.9 -41.1 27.0 0.174 0.0 HOH
 3.126
 N
 O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 VAL B:116 B:116 11.0 0.071 H -71.7 -40.1 11.0 0.071 0.0 HOH
 2.963
 N
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 VAL B:116 B:116 26.0 0.168 H -68.2 -40.0 26.0 0.168 0.0 HOH
 3.233
 N
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 VAL B:116 B:116 9.0 0.058 H -62.6 -40.5 9.0 0.058 0.0 HOH
 2.937
 N
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 VAL B:116 B:116 10.0 0.065 H -65.3 -40.8 10.0 0.065 0.0 HOH
 3.101
 N
 O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 VAL B:116 B:116 8.0 0.052 H -66.7 -36.9 8.0 0.052 0.0 HOH
 3.032
 N
 O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 VAL B:116 B:116 10.0 0.065 H -65.1 -41.3 10.0 0.065 0.0 HOH
 3.097
 N
 O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 VAL B:116 B:116 8.0 0.052 H -70.4 -35.2 8.0 0.052 0.0 HOH
 3.006
 N
 O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 VAL B:115 B:116 10.0 0.065 H -69.7 -36.1 10.0 0.065 0.0 HOH
 3.122
 N
 O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 VAL B:115 B:116 32.0 0.206 H -64.5 -45.8 32.0 0.206 0.0 HOH
 3.048
 N
 O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 VAL B:115 B:116 12.0 0.077 H -64.2 -39.7 12.0 0.077 0.0 HOH
 3.132
 N
 O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 VAL B:115 B:116 9.0 0.058 H -65.5 -39.7 9.0 0.058 0.0 HOH
 3.064
 N
 O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 VAL B:115 B:116 12.0 0.077 H -60.2 -38.9 12.0 0.077 0.0 HOH
 3.014
 N
 O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 VAL B:115 B:116 13.0 0.084 H -67.1 -37.5 13.0 0.084 0.0 HOH
 3.059
 N
 O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 VAL B:115 B:116 11.0 0.071 H -67.8 -39.6 11.0 0.071 0.0 HOH
 3.135
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 VAL A:116 A:116 28.0 0.181 H -60.7 -38.1