Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76257153 . T A CCDS669.1:NM_004582.3:c.476cTt>cAt_NP_004573.2:p.159L>H Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 LEU B:160 B:159 35.0 0.206 G -59.7 -24.7 35.0 0.206 0.0 HOH
 8.928
 N
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LEU B:164 B:159 39.0 0.229 G -80.4 -29.9 39.0 0.229 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LEU B:164 B:159 40.0 0.235 G -74.8 -38.3 40.0 0.235 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LEU B:164 B:159 43.0 0.253 G -71.3 -34.5 43.0 0.253 0.0
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LEU B:164 B:159 34.0 0.2 G -70.2 -25.8 34.0 0.2 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 LEU B:159 B:159 39.0 0.229 G -63.4 -24.4 39.0 0.229 0.0 HOH
 4.426
 CD2
 O
LEU D:159 D:159 38.0 0.224 G -66.3 -27.1 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 LEU B:159 B:159 32.0 0.188 T -54.2 -4.6 32.0 0.188 0.0 HOH
 7.463
 CD2
 O
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 LEU B:159 B:159 41.0 0.241 G -60.5 -27.6 41.0 0.241 0.0 HOH
 2.971
 N
 O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LEU B:159 B:159 41.0 0.241 G -56.1 -29.4 41.0 0.241 0.0 HOH
 3.019
 N
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LEU B:159 B:159 40.0 0.235 G -62.7 -25.9 40.0 0.235 0.0 HOH
 2.871
 N
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LEU B:159 B:159 42.0 0.247 G -60.2 -31.1 42.0 0.247 0.0 HOH
 2.831
 N
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LEU B:159 B:159 43.0 0.253 G -56.9 -28.5 43.0 0.253 0.0 HOH
 2.938
 N
 O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LEU B:159 B:159 41.0 0.241 G -58.0 -32.1 41.0 0.241 0.0 HOH
 2.984
 N
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LEU B:159 B:159 42.0 0.247 G -60.2 -28.8 42.0 0.247 0.0 HOH
 2.905
 N
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LEU B:159 B:159 40.0 0.235 G -56.7 -38.7 40.0 0.235 0.0 HOH
 3.073
 N
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LEU B:159 B:159 40.0 0.235 G -59.5 -29.1 40.0 0.235 0.0 HOH
 2.860
 N
 O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LEU B:159 B:159 40.0 0.235 G -57.9 -33.0 40.0 0.235 0.0 HOH
 2.916
 N
 O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LEU B:159 B:159 43.0 0.253 G -59.9 -28.1 43.0 0.253 0.0 HOH
 2.887
 N
 O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LEU B:159 B:159 39.0 0.229 G -59.2 -29.9 39.0 0.229 0.0 HOH
 2.980
 N
 O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LEU B:158 B:159 43.0 0.253 G -57.5 -31.4 43.0 0.253 0.0 HOH
 3.070
 N
 O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LEU B:158 B:159 41.0 0.241 G -56.4 -25.5 41.0 0.241 0.0 HOH
 2.945
 N
 O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LEU B:158 B:159 41.0 0.241 G -58.9 -31.8 41.0 0.241 0.0 HOH
 2.925
 N
 O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 LEU B:158 B:159 43.0 0.253 G -59.2 -33.9 43.0 0.253 0.0 HOH
 3.005
 N
 O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LEU B:158 B:159 44.0 0.259 G -49.3 -37.3 44.0 0.259 0.0 HOH
 2.954
 N
 O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LEU B:158 B:159 43.0 0.253 G -58.8 -32.3 43.0 0.253 0.0 HOH
 2.855
 N
 O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LEU B:158 B:159 40.0 0.235 G -59.7 -28.7 40.0 0.235 0.0 HOH
 2.985
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 LEU A:159 A:159 39.0 0.229 G -60.4 -25.8