Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76257237 . C A CCDS669.1:NM_004582.3:c.560tCt>tAt_NP_004573.2:p.187S>Y Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 SER B:188 B:187 25.0 0.217 -76.8 152.2 2.0 0.017 0.2 A:Q7Z6K3:0.2
 HOH
 3.051
 OG
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 SER B:192 B:187 25.0 0.217 -77.1 161.8 3.0 0.026 0.191 A:Q7Z6K3:0.191
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 SER B:192 B:187 30.0 0.261 -70.4 159.6 0.0 0.0 0.261 A:Q7Z6K3:0.261
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 SER B:192 B:187 26.0 0.226 -86.9 158.4 5.0 0.043 0.183 A:Q7Z6K3:0.183
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 SER B:192 B:187 26.0 0.226 -98.0 154.4 4.0 0.035 0.191 A:Q7Z6K3:0.191
 GRG
 8.854
 CB
 C4
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 SER B:187 B:187 25.0 0.217 -82.9 154.8 1.0 0.009 0.208 A:Q08602:0.209
 HOH
 2.902
 CB
 O
SER D:187 D:187 31.0 0.27 -85.5 154.2 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 SER B:187 B:187 31.0 0.27 -59.7 161.5 1.0 0.009 0.261 A:Q08602:0.261
 HOH
 6.101
 O
 O
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 SER B:187 B:187 32.0 0.278 -72.8 142.1 2.0 0.017 0.261 A:Q08602:0.261
 HOH
 2.936
 OG
 O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 SER B:187 B:187 30.0 0.261 -74.5 145.5 3.0 0.026 0.235 A:Q08602:0.235
 HOH
 2.807
 O
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 SER B:187 B:187 33.0 0.287 -77.9 140.4 2.0 0.017 0.27 A:Q08602:0.27
 HOH
 3.136
 OG
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 SER B:187 B:187 31.0 0.27 -78.8 143.8 2.0 0.017 0.253 A:Q08602:0.252
 HOH
 2.887
 O
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 SER B:187 B:187 31.0 0.27 -75.5 145.4 3.0 0.026 0.244 A:Q08602:0.243
 HOH
 2.916
 O
 O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 SER B:187 B:187 30.0 0.261 -78.3 144.9 1.0 0.009 0.252 A:Q08602:0.252
 HOH
 3.218
 CB
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 SER B:187 B:187 32.0 0.278 -78.6 147.0 3.0 0.026 0.252 A:Q08602:0.252
 HOH
 2.698
 O
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 SER B:187 B:187 31.0 0.27 -75.0 145.0 2.0 0.017 0.253 A:Q08602:0.252
 HOH
 3.111
 CB
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 SER B:187 B:187 29.0 0.252 -77.0 147.6 3.0 0.026 0.226 A:Q08602:0.226
 HOH
 2.769
 O
 O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 SER B:187 B:187 31.0 0.27 -77.5 146.2 3.0 0.026 0.244 A:Q08602:0.243
 HOH
 2.806
 O
 O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 SER B:187 B:187 29.0 0.252 -85.2 144.2 3.0 0.026 0.226 A:Q08602:0.226
 HOH
 3.151
 OG
 O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 SER B:187 B:187 30.0 0.261 -79.6 145.2 2.0 0.017 0.244 A:Q08602:0.243
 HOH
 2.853
 O
 O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 SER B:186 B:187 31.0 0.27 -85.2 142.4 3.0 0.026 0.244 A:Q08602:0.243
 HOH
 4.279
 N
 O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 SER B:186 B:187 34.0 0.296 -72.3 143.8 3.0 0.026 0.27 A:Q08602:0.27
 HOH
 2.987
 O
 O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 SER B:186 B:187 33.0 0.287 -76.4 146.6 3.0 0.026 0.261 A:Q08602:0.261
 HOH
 2.779
 O
 O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 SER B:186 B:187 29.0 0.252 -82.2 146.8 2.0 0.017 0.235 A:Q08602:0.235
 PJA
HOH
 9.959
3.023
 CB
CB
 CAA
O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 SER B:186 B:187 32.0 0.278 -81.1 140.5 3.0 0.026 0.252 A:Q08602:0.252
 HOH
 2.724
 O
 O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 SER B:186 B:187 33.0 0.287 -73.2 146.0 4.0 0.035 0.252 A:Q08602:0.252
 HOH
 2.782
 O
 O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 SER B:186 B:187 30.0 0.261 -73.5 144.5 3.0 0.026 0.235 A:Q08602:0.235
 HOH
 2.880
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 SER A:187 A:187 31.0 0.27 -79.2 144.1