Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76257870 . A C CCDS669.1:NM_004582.3:c.584tAt>tCt_NP_004573.2:p.195Y>S Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 TYR B:196 B:195 13.0 0.057 H -62.1 -43.5 13.0 0.057 0.0 HOH
 4.521
 CD2
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:200 B:195 21.0 0.091 H -56.9 -40.3 21.0 0.091 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:200 B:195 18.0 0.078 H -58.1 -34.0 18.0 0.078 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:200 B:195 10.0 0.043 H -57.0 -45.5 10.0 0.043 0.0 GER
 3.575
 OH
 C19
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 TYR B:200 B:195 10.0 0.043 H -57.5 -43.3 10.0 0.043 0.0 GRG
 3.766
 OH
 C20
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 TYR B:195 B:195 16.0 0.07 H -55.9 -53.1 16.0 0.07 0.0 HOH
 4.201
 OH
 O
TYR D:195 D:195 17.0 0.074 H -58.5 -48.3 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 TYR B:195 B:195 16.0 0.07 H -60.6 -52.0 16.0 0.07 0.0 FAR
HOH
 3.612
7.556
 OH
CE2
 C15
O
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 TYR B:195 B:195 13.0 0.057 H -50.6 -52.1 13.0 0.057 0.0 CX1
HOH
 3.230
2.839
 CE2
OH
 C3
O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:195 B:195 20.0 0.087 H -57.9 -48.9 20.0 0.087 0.0 HOH
 2.482
 OH
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:195 B:195 10.0 0.043 H -56.0 -49.9 10.0 0.043 0.0 GRG
HOH
 3.650
7.456
 OH
CE2
 C19
O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:195 B:195 10.0 0.043 H -57.7 -50.7 10.0 0.043 0.0 FPP
HOH
 3.757
7.337
 OH
CE2
 C14
O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:195 B:195 11.0 0.048 H -56.2 -48.6 11.0 0.048 0.0 GER
HOH
 3.619
7.220
 OH
CE2
 C19
O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:195 B:195 11.0 0.048 H -58.4 -48.7 11.0 0.048 0.0 GER
HOH
 3.977
7.105
 OH
CE2
 C20
O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 TYR B:195 B:195 11.0 0.048 H -58.7 -46.8 11.0 0.048 0.0 GER
HOH
 3.772
7.432
 OH
CE2
 C19
O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:195 B:195 18.0 0.078 H -50.4 -49.7 18.0 0.078 0.0 BD5
HOH
 3.607
7.196
 CE2
OH
 C1
O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:195 B:195 0.0 0.0 H -58.8 -47.1 0.0 0.0 0.0 BD6
HOH
 4.008
7.705
 CE2
OH
 CH2
O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:195 B:195 11.0 0.048 H -58.6 -47.1 11.0 0.048 0.0 BD7
HOH
 4.349
4.149
 CE2
OH
 CE1
O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:195 B:195 0.0 0.0 H -57.1 -46.9 0.0 0.0 0.0 BD8
HOH
 3.340
7.738
 OH
N
 CAL
O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 TYR B:195 B:195 9.0 0.039 H -60.5 -49.1 9.0 0.039 0.0 BD9
HOH
 3.798
7.338
 OH
N
 C10
O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 TYR B:194 B:195 10.0 0.043 H -54.7 -46.9 10.0 0.043 0.0 3PZ
DMS
DMS
DMS
DMS
HOH
 7.556
5.488
7.424
4.267
3.523
7.536
 CD2
CD2
CB
CE2
OH
OH
 C21
C1
C1
C1
C2
O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 TYR B:194 B:195 10.0 0.043 H -50.2 -48.0 10.0 0.043 0.0 3PZ
GRG
HOH
 7.539
3.677
7.284
 CD2
OH
CE2
 C21
C19
O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 TYR B:194 B:195 10.0 0.043 H -57.6 -49.6 10.0 0.043 0.0 PZ3
HOH
 3.907
7.951
 CE2
CE2
 CAJ
O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 TYR B:194 B:195 15.0 0.065 H -55.7 -50.7 15.0 0.065 0.0 PJA
HOH
 5.215
2.056
 CD2
OH
 CAD
O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 TYR B:194 B:195 9.0 0.039 H -59.6 -45.0 9.0 0.039 0.0 7TP
HOH
 8.261
2.500
 CE2
CZ
 CAI
O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 TYR B:194 B:195 19.0 0.083 H -57.4 -48.1 19.0 0.083 0.0 7TQ
HOH
 3.303
2.254
 OH
OH
 CAI
O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 TYR B:194 B:195 15.0 0.065 H -58.6 -47.2 15.0 0.065 0.0 7TR
HOH
 4.042
3.484
 CD2
N
 CAA
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 TYR A:195 A:195 17.0 0.074 H -56.9 -50.4