Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76259812 . A C CCDS669.1:NM_004582.3:c.749aAg>aCg_NP_004573.2:p.250K>T Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 LYS B:251 B:250 95.0 0.475 H -57.8 -48.1 95.0 0.475 0.0 HOH
 5.338
 NZ
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:255 B:250 84.0 0.42 H -68.6 -40.6 84.0 0.42 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:255 B:250 88.0 0.44 H -64.7 -33.6 88.0 0.44 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:255 B:250 95.0 0.475 H -65.3 -35.8 95.0 0.475 0.0 TLA
 2.441
 NZ
 O4
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 LYS B:255 B:250 88.0 0.44 H -65.8 -38.3 88.0 0.44 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 LYS B:250 B:250 83.0 0.415 H -62.2 -43.4 83.0 0.415 0.0 HOH
 2.926
 NZ
 O
LYS D:250 D:250 75.0 0.375 H -73.5 -40.1 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 LYS B:250 B:250 76.0 0.38 H -60.4 -51.0 76.0 0.38 0.0 HOH
 4.240
 NZ
 O
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 LYS B:250 B:250 92.0 0.46 H -58.8 -44.2 92.0 0.46 0.0 HOH
 2.643
 O
 O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:250 B:250 85.0 0.425 H -60.6 -44.2 85.0 0.425 0.0 HOH
 2.572
 O
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:250 B:250 91.0 0.455 H -62.3 -44.0 91.0 0.455 0.0 HOH
 3.344
 CE
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:250 B:250 76.0 0.38 H -62.8 -45.5 76.0 0.38 0.0 HOH
 2.385
 O
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:250 B:250 89.0 0.445 H -62.4 -44.8 89.0 0.445 0.0 HOH
 2.457
 O
 O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:250 B:250 87.0 0.435 H -58.8 -45.0 87.0 0.435 0.0 HOH
 2.618
 O
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 LYS B:250 B:250 74.0 0.37 H -64.7 -44.3 74.0 0.37 0.0 HOH
 4.082
 CD
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:250 B:250 85.0 0.425 H -57.8 -46.6 85.0 0.425 0.0 HOH
 4.042
 CA
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:250 B:250 69.0 0.345 H -61.8 -46.3 69.0 0.345 0.0 HOH
 2.456
 O
 O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:250 B:250 78.0 0.39 H -61.1 -43.9 78.0 0.39 0.0 HOH
 2.394
 O
 O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:250 B:250 80.0 0.4 H -60.6 -46.2 80.0 0.4 0.0 HOH
 2.480
 O
 O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 LYS B:250 B:250 91.0 0.455 H -64.4 -42.1 91.0 0.455 0.0 HOH
 2.512
 O
 O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LYS B:249 B:250 77.0 0.385 H -59.9 -46.5 77.0 0.385 0.0 HOH
 3.211
 NZ
 O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LYS B:249 B:250 83.0 0.415 H -58.1 -42.2 83.0 0.415 0.0 HOH
 2.824
 O
 O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 LYS B:249 B:250 74.0 0.37 H -62.6 -45.0 74.0 0.37 0.0 HOH
 2.366
 NZ
 O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 LYS B:249 B:250 87.0 0.435 H -58.2 -47.1 87.0 0.435 0.0 HOH
 2.508
 O
 O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LYS B:249 B:250 80.0 0.4 H -61.9 -45.7 80.0 0.4 0.0 HOH
 8.211
 CG
 O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LYS B:249 B:250 71.0 0.355 H -63.4 -42.3 71.0 0.355 0.0 HOH
 2.436
 NZ
 O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 LYS B:249 B:250 70.0 0.35 H -60.9 -43.2 70.0 0.35 0.0 HOH
 3.329
 NZ
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 LYS A:250 A:250 89.0 0.445 H -66.4 -43.4