Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76259854 . G A CCDS669.1:NM_004582.3:c.791cGt>cAt_NP_004573.2:p.264R>H Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 ARG B:265 B:264 59.0 0.262 H -59.6 -41.1 59.0 0.262 0.0 HOH
 2.506
 NE
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 ARG B:269 B:264 54.0 0.24 H -58.4 -49.2 54.0 0.24 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 ARG B:269 B:264 56.0 0.249 H -62.9 -43.1 56.0 0.249 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 ARG B:269 B:264 73.0 0.324 H -60.3 -44.0 73.0 0.324 0.0
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 ARG B:269 B:264 75.0 0.333 H -60.6 -41.0 75.0 0.333 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 ARG B:264 B:264 64.0 0.284 H -56.9 -51.2 64.0 0.284 0.0 HOH
 3.547
 CB
 O
ARG D:264 D:264 56.0 0.249 H -53.3 -47.7 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 ARG B:264 B:264 57.0 0.253 H -62.4 -38.8 57.0 0.253 0.0
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 ARG B:264 B:264 81.0 0.36 H -49.3 -45.2 81.0 0.36 0.0 HOH
 3.898
 CD
 O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 ARG B:264 B:264 60.0 0.267 H -54.6 -44.3 60.0 0.267 0.0 HOH
 2.471
 NE
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 ARG B:264 B:264 61.0 0.271 H -53.2 -45.1 61.0 0.271 0.0 HOH
 3.367
 NH1
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 ARG B:264 B:264 69.0 0.307 H -59.2 -43.4 69.0 0.307 0.0 HOH
 3.490
 CD
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 ARG B:264 B:264 59.0 0.262 H -59.3 -45.2 59.0 0.262 0.0 HOH
 3.266
 NH1
 O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 ARG B:264 B:264 58.0 0.258 H -57.1 -46.8 58.0 0.258 0.0 HOH
 5.061
 O
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 ARG B:264 B:264 69.0 0.307 H -58.5 -43.1 69.0 0.307 0.0 HOH
 5.054
 O
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 ARG B:264 B:264 93.0 0.413 H -52.9 -45.3 93.0 0.413 0.0 HOH
 5.782
 CD
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 ARG B:264 B:264 74.0 0.329 H -58.5 -44.1 74.0 0.329 0.0 HOH
 3.306
 NE
 O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 ARG B:264 B:264 59.0 0.262 H -57.4 -44.0 59.0 0.262 0.0 HOH
 2.435
 NE
 O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 ARG B:264 B:264 53.0 0.236 H -60.3 -39.2 53.0 0.236 0.0 HOH
 3.322
 CD
 O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 ARG B:264 B:264 69.0 0.307 H -56.6 -45.2 69.0 0.307 0.0 HOH
 3.549
 CD
 O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 ARG B:263 B:264 53.0 0.236 H -57.6 -42.9 53.0 0.236 0.0 HOH
 3.525
 NH2
 O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 ARG B:263 B:264 54.0 0.24 H -57.0 -47.4 54.0 0.24 0.0 HOH
 3.861
 NH1
 O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 ARG B:263 B:264 75.0 0.333 H -54.3 -43.3 75.0 0.333 0.0 HOH
 2.938
 NH2
 O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 ARG B:263 B:264 73.0 0.324 H -48.7 -46.4 73.0 0.324 0.0 HOH
 2.351
 NH1
 O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 ARG B:263 B:264 65.0 0.289 H -54.4 -47.7 65.0 0.289 0.0 HOH
 4.879
 CD
 O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 ARG B:263 B:264 79.0 0.351 H -49.5 -47.6 79.0 0.351 0.0 HOH
 3.387
 NH1
 O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 ARG B:263 B:264 67.0 0.298 H -54.4 -45.7 67.0 0.298 0.0 HOH
 2.360
 NE
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 ARG A:264 A:264 60.0 0.267 H -54.7 -49.3