Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 76259887 . C A CCDS669.1:NM_004582.3:c.824aCg>aAg_NP_004573.2:p.275T>K Homo sapiens Rab geranylgeranyltransferase beta subunit (RABGGTB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6o60 2 P53611 100.0 0.0 X-RAY
 2019-06-26 THR B:276 B:275 70.0 0.5 T -96.3 -21.9 70.0 0.5 0.0 HOH
 6.184
 N
 O
6j6x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 THR B:280 B:275 72.0 0.514 S -86.2 -49.3 72.0 0.514 0.0
6j74 2 P53611 100.0 0.0 X-RAY
 2020-01-22 THR B:280 B:275 72.0 0.514 S -97.5 -43.3 72.0 0.514 0.0
6j7f 2 P53611 100.0 0.0 X-RAY
 2020-01-22 THR B:280 B:275 74.0 0.529 T -89.0 -43.4 74.0 0.529 0.0
6j7x 2 P53611 100.0 0.0 X-RAY
 2020-01-22 THR B:280 B:275 77.0 0.55 S -72.7 -44.4 77.0 0.55 0.0
1dce 2 Q08603 95.77 0.0 X-RAY
 2000-03-24 THR B:275 B:275 68.0 0.486 T 57.8 -38.9 67.0 0.479 0.007 A:Q08602:0.007
 HOH
 5.900
 N
 O
THR D:275 D:275 85.0 0.607 T 66.4 -40.7 NA NA NA
1ltx 2 Q08603 95.77 0.0 X-RAY
 2003-05-21 THR B:275 B:275 82.0 0.586 T -61.0 -25.3 82.0 0.586 0.0
3c72 2 Q08603 95.77 0.0 X-RAY
 2008-07-22 THR B:275 B:275 71.0 0.507 T -96.3 -16.0 71.0 0.507 0.0 HOH
 3.130
 CG2
 O
3dss 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 THR B:275 B:275 65.0 0.464 T -103.4 -17.7 65.0 0.464 0.0 HOH
 2.658
 O
 O
3dst 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 THR B:275 B:275 79.0 0.564 T -90.7 -18.8 79.0 0.564 0.0 HOH
 5.956
 O
 O
3dsu 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 THR B:275 B:275 80.0 0.571 T -101.0 -18.5 80.0 0.571 0.0 HOH
 5.988
 O
 O
3dsv 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 THR B:275 B:275 77.0 0.55 T -76.9 -25.0 70.0 0.5 0.05 A:Q08602:0.05
 HOH
 3.783
 CG2
 O
3dsw 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 THR B:275 B:275 77.0 0.55 T -94.1 -19.3 71.0 0.507 0.043 A:Q08602:0.043
 HOH
 5.995
 O
 O
3dsx 2 Q08603 95.77 0.0 X-RAY
 2008-09-09 THR B:275 B:275 79.0 0.564 T -97.1 -14.4 71.0 0.507 0.057 A:Q08602:0.057
 HOH
 6.067
 O
 O
3hxb 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 THR B:275 B:275 83.0 0.593 T -88.3 -21.1 83.0 0.593 0.0 HOH
 3.673
 O
 O
3hxc 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 THR B:275 B:275 75.0 0.536 T -89.1 -21.8 75.0 0.536 0.0 HOH
 3.371
 CG2
 O
3hxd 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 THR B:275 B:275 76.0 0.543 T -93.8 -19.7 76.0 0.543 0.0 HOH
 2.756
 O
 O
3hxe 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 THR B:275 B:275 64.0 0.457 T -85.4 -18.7 64.0 0.457 0.0 HOH
 4.457
 N
 O
3hxf 2 Q08603 95.77 0.0 X-RAY
 2009-09-08 THR B:275 B:275 64.0 0.457 T -92.2 -20.2 64.0 0.457 0.0 HOH
 4.151
 O
 O
3pz1 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 THR B:274 B:275 60.0 0.429 T -86.7 -13.7 60.0 0.429 0.0 HOH
 2.723
 O
 O
3pz2 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 THR B:274 B:275 68.0 0.486 T -98.3 -14.9 68.0 0.486 0.0 HOH
 2.881
 O
 O
3pz3 2 Q08603 95.76 0.0 X-RAY
 2011-05-11 THR B:274 B:275 75.0 0.536 T -75.5 -17.5 75.0 0.536 0.0 HOH
 5.781
 O
 O
4ehm 2 Q08603 95.76 0.0 X-RAY
 2012-05-30 THR B:274 B:275 77.0 0.55 T -83.7 -4.0 77.0 0.55 0.0 HOH
 5.735
 O
 O
4gts 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 THR B:274 B:275 85.0 0.607 T -58.9 -28.8 85.0 0.607 0.0 HOH
 5.238
 N
 O
4gtt 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 THR B:274 B:275 76.0 0.543 T -73.8 -17.1 76.0 0.543 0.0 HOH
 3.923
 CG2
 O
4gtv 2 Q08603 95.76 0.0 X-RAY
 2012-10-24 THR B:274 B:275 67.0 0.479 T -95.5 -19.0 67.0 0.479 0.0 HOH
 2.606
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p53611-f1 1 P53611 100.0 0.0 THR A:275 A:275 73.0 0.521 T -99.5 -19.6