Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7997755 . C A CCDS92.1:NM_001561.5:c.408tgG>tgT_NP_001552.2:p.136W>C Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 TRP B:113 B:136 77.0 0.302 -68.1 158.3 77.0 0.302 0.0 NAG
 4.151
 CH2
 O5
TRP D:113 D:136 82.0 0.322 -68.2 159.6 NA NA NA
TRP F:113 F:136 80.0 0.314 -68.4 159.5 NA NA NA
TRP H:113 H:136 84.0 0.329 -65.5 157.4 NA NA NA
TRP J:113 J:136 80.0 0.314 -65.7 156.3 NA NA NA
TRP L:113 L:136 84.0 0.329 -64.4 156.9 NA NA NA
TRP N:113 N:136 79.0 0.31 -66.8 159.4 NA NA NA
TRP P:113 P:136 86.0 0.337 -67.9 158.8 NA NA NA
TRP R:113 R:136 82.0 0.322 -63.9 158.1 NA NA NA
TRP T:113 T:136 84.0 0.329 -57.1 150.1 NA NA NA
TRP V:113 V:136 81.0 0.318 -66.1 156.0 NA NA NA
TRP X:113 X:136 85.0 0.333 -68.2 160.5 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 TRP C:113 C:136 63.0 0.247 -62.7 147.9 63.0 0.247 0.0 HOH
 2.589
 O
 O
TRP F:113 F:136 65.0 0.255 -57.1 150.8 NA NA NA
TRP I:113 I:136 65.0 0.255 -61.1 155.9 NA NA NA
TRP L:113 L:136 64.0 0.251 -59.0 149.2 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 TRP D:112 X:136 72.0 0.282 -56.3 151.1 72.0 0.282 0.0 NAG
FUC
NAG
FUC
HOH
 3.891
7.931
6.912
5.088
8.513
 CZ3
CZ3
CZ3
CH2
CZ2
 O5
C1
C8
O5
O
TRP E:112 Y:136 71.0 0.278 -58.8 150.3 71.0 0.278 0.0 NAG
FUC
NAG
FUC
HOH
 3.790
8.024
6.346
4.704
3.473
 CH2
CZ3
CZ3
CH2
CZ2
 C6
C1
C8
O2
O
TRP F:112 Z:136 72.0 0.282 -64.6 159.1 72.0 0.282 0.0 NAG
FUC
NAG
FUC
HOH
 4.030
8.021
7.028
4.102
6.452
 CZ3
CZ3
CZ3
CH2
CZ2
 O5
C1
N2
C6
O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 TRP E:112 F:136 66.0 0.259 -57.4 150.7 66.0 0.259 0.0 NAG
FUC
EPE
 6.875
5.184
5.959
 CZ3
CZ3
CB
 O6
O3
O1S
TRP F:112 C:136 66.0 0.259 -53.1 150.7 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 TRP E:112 F:136 57.0 0.224 -62.5 142.0 NA NA NA
TRP F:112 C:136 56.0 0.22 -69.0 154.2 56.0 0.22 0.0 NAG
HOH
 8.494
8.395
 CH2
CD1
 O5
O
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 TRP D:114 D:136 71.0 0.278 -56.4 138.1 71.0 0.278 0.0 NAG
HOH
 7.354
7.350
 CZ3
CZ2
 O6
O
TRP E:114 F:136 66.0 0.259 -54.8 139.1 66.0 0.259 0.0 NAG
HOH
 7.610
7.455
 CZ3
CZ2
 O6
O
TRP F:114 E:136 69.0 0.271 -55.0 139.4 69.0 0.271 0.0 NAG
HOH
 7.707
7.737
 CZ3
CZ2
 O6
O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 TRP A:112 A:136 69.0 0.271 -45.9 144.8 69.0 0.271 0.0 NAG
NAG
FUC
 5.776
7.555
4.644
 CE3
CZ3
CH2
 C8
C6
C6
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 TRP G:114 G:136 57.0 0.224 -63.7 138.3 57.0 0.224 0.0 NAG
HOH
 5.448
7.073
 CZ3
O
 O5
O
TRP H:114 H:136 62.0 0.243 -63.6 138.4 NA NA NA
TRP I:114 J:136 58.0 0.227 -63.0 138.9 NA NA NA
TRP J:114 K:136 91.0 0.357 -63.4 138.1 91.0 0.357 0.0 HOH
 2.355
 N
 O
TRP K:114 L:136 69.0 0.271 -63.2 138.3 NA NA NA
TRP L:114 I:136 65.0 0.255 -63.5 138.7 65.0 0.255 0.0
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 TRP C:113 D:136 44.0 0.173 -62.3 143.3 NA NA NA
TRP D:113 E:136 63.0 0.247 -62.4 142.4 63.0 0.247 0.0 PEG
HOH
 6.762
8.606
 CH2
NE1
 O1
O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 TRP A:133 AAA:136 56.0 0.22 -46.6 157.8 56.0 0.22 0.0 SO4
HOH
 4.189
2.703
 HZ2
HZ2
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 TRP A:136 A:136 61.0 0.239 -59.8 146.8