Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7997763 . G A CCDS92.1:NM_001561.5:c.400Cga>Tga_NP_001552.2:p.134R>* Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 ARG B:111 B:134 141.0 0.627 E -125.1 152.3 141.0 0.627 0.0
ARG D:111 D:134 149.0 0.662 E -121.0 152.3 NA NA NA
ARG F:111 F:134 145.0 0.644 E -127.7 147.2 NA NA NA
ARG H:111 H:134 143.0 0.636 E -108.6 129.9 NA NA NA
ARG J:111 J:134 142.0 0.631 E -115.3 152.3 NA NA NA
ARG L:111 L:134 148.0 0.658 E -107.2 130.9 NA NA NA
ARG N:111 N:134 141.0 0.627 E -126.8 152.7 NA NA NA
ARG P:111 P:134 145.0 0.644 E -120.5 152.7 NA NA NA
ARG R:111 R:134 136.0 0.604 E -126.2 150.5 NA NA NA
ARG T:111 T:134 145.0 0.644 -128.6 100.7 NA NA NA
ARG V:111 V:134 146.0 0.649 E -133.3 154.6 NA NA NA
ARG X:111 X:134 104.0 0.462 E -116.0 153.6 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 ARG C:111 C:134 116.0 0.516 E -140.8 151.6 13.0 0.058 0.458 A:None:0.458
 HOH
 2.484
 NH1
 O
ARG F:111 F:134 119.0 0.529 E -146.8 155.3 NA NA NA
ARG I:111 I:134 110.0 0.489 E -139.0 152.0 NA NA NA
ARG L:111 L:134 109.0 0.484 E -130.4 148.1 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 ARG D:110 X:134 79.0 0.351 E -115.4 150.7 79.0 0.351 0.0 HOH
 7.588
 NH2
 O
ARG E:110 Y:134 158.0 0.702 E -120.4 144.9 158.0 0.702 0.0 HOH
 6.844
 O
 O
ARG F:110 Z:134 88.0 0.391 E -132.4 148.2 88.0 0.391 0.0
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 ARG E:110 F:134 82.0 NA E -103.9 152.3 82.0 NA NA
ARG F:110 C:134 103.0 0.458 E -94.8 150.8 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 ARG E:110 F:134 115.0 0.511 E -121.6 139.7 NA NA NA
ARG F:110 C:134 110.0 0.489 E -122.9 151.4 9.0 0.04 0.449 A:None:0.449
 HOH
 8.974
 NH1
 O
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 ARG D:112 D:134 150.0 0.667 E -107.6 153.2 150.0 0.667 0.0
ARG E:112 F:134 148.0 0.658 E -107.2 154.9 148.0 0.658 0.0 HOH
 2.564
 NH2
 O
ARG F:112 E:134 150.0 0.667 E -106.7 154.9 150.0 0.667 0.0 HOH
 4.441
 NH2
 O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 ARG A:110 A:134 151.0 0.671 E -101.3 159.1 151.0 0.671 0.0 SO4
 7.013
 N
 O2
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 ARG G:112 G:134 133.0 0.591 E -76.0 158.0 133.0 0.591 0.0 HOH
 6.441
 N
 O
ARG H:112 H:134 43.0 NA E -75.2 158.2 NA NA NA
ARG I:112 J:134 129.0 0.573 E -75.9 158.2 NA NA NA
ARG J:112 K:134 129.0 0.573 E -75.9 158.3 129.0 0.573 0.0 HOH
 2.887
 O
 O
ARG K:112 L:134 128.0 0.569 E -76.1 158.1 NA NA NA
ARG L:112 I:134 130.0 0.578 E -76.3 158.4 130.0 0.578 0.0
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 ARG C:111 D:134 91.0 0.404 E -115.2 154.5 NA NA NA
ARG D:111 E:134 184.0 0.818 E -112.7 155.8 184.0 0.818 0.0
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 ARG A:131 AAA:134 154.0 0.684 E -112.3 143.2 154.0 0.684 0.0 EDO
HOH
 7.872
4.346
 H
HA
 H21
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 ARG A:134 A:134 154.0 0.684 E -108.4 147.3