Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7997774 . C A CCDS92.1:NM_001561.5:c.389cGt>cTt_NP_001552.2:p.130R>L Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 ARG B:107 B:130 132.0 0.587 S -94.3 4.3 132.0 0.587 0.0
ARG D:107 D:130 153.0 0.68 S -99.5 1.7 NA NA NA
ARG F:107 F:130 139.0 0.618 S -94.6 4.0 NA NA NA
ARG H:107 H:130 141.0 0.627 T -93.8 5.1 NA NA NA
ARG J:107 J:130 154.0 0.684 S -94.7 6.5 NA NA NA
ARG L:107 L:130 130.0 0.578 S -74.8 -5.2 NA NA NA
ARG N:107 N:130 137.0 0.609 S -96.1 4.7 NA NA NA
ARG P:107 P:130 210.0 0.933 S -73.7 -4.6 NA NA NA
ARG R:107 R:130 157.0 0.698 S -96.7 3.3 NA NA NA
ARG T:107 T:130 147.0 0.653 S -89.6 6.4 NA NA NA
ARG V:107 V:130 194.0 0.862 S -96.3 6.8 NA NA NA
ARG X:107 X:130 172.0 0.764 S -96.7 4.1 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 ARG C:107 C:130 127.0 0.564 S -145.9 176.6 50.0 0.222 0.342 A:None:0.342
 HOH
 2.883
 NH2
 O
ARG F:107 F:130 127.0 0.564 S -137.5 175.3 NA NA NA
ARG I:107 I:130 129.0 0.573 S -142.2 179.6 NA NA NA
ARG L:107 L:130 126.0 0.56 S -140.9 172.9 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 ARG D:106 X:130 154.0 0.684 T 57.4 42.4 154.0 0.684 0.0 HOH
 3.120
 N
 O
ARG E:106 Y:130 142.0 0.631 T 52.1 53.2 142.0 0.631 0.0 HOH
 4.420
 NE
 O
ARG F:106 Z:130 179.0 0.796 T 56.7 32.3 179.0 0.796 0.0 GOL
HOH
 4.279
8.618
 NH1
NH2
 O3
O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 ARG E:106 F:130 99.0 0.44 S -127.4 159.7 99.0 0.44 0.0 HOH
 7.421
 NH2
 O
ARG F:106 C:130 102.0 0.453 S -135.6 166.2 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 ARG E:106 F:130 138.0 0.613 S -144.8 163.1 NA NA NA
ARG F:106 C:130 131.0 0.582 S -151.8 164.8 47.0 0.209 0.373 A:None:0.373
 GOL
GOL
HOH
 8.278
4.546
5.041
 NH2
NH1
NE
 O3
O1
O
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 ARG D:108 D:130 75.0 NA T 53.7 33.0 75.0 NA NA
ARG E:108 F:130 76.0 NA T 52.9 33.3 76.0 NA NA
ARG F:108 E:130 76.0 NA T 52.7 34.1 76.0 NA NA HOH
 5.831
 C
 O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 ARG A:106 A:130 111.0 0.493 S -92.9 170.1 111.0 0.493 0.0 CL
HOH
 3.200
4.956
 NH2
N
 CL
O
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 ARG G:108 G:130 86.0 NA T 43.8 52.0 86.0 NA NA HOH
 6.679
 CB
 O
ARG H:108 H:130 186.0 0.827 T 43.3 52.4 NA NA NA
ARG I:108 J:130 85.0 NA T 43.5 52.3 NA NA NA
ARG J:108 K:130 88.0 NA T 43.8 52.1 88.0 NA NA
ARG K:108 L:130 87.0 NA T 43.4 52.0 NA NA NA
ARG L:108 I:130 81.0 NA T 44.5 51.5 81.0 NA NA
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 ARG C:107 D:130 193.0 0.858 T 59.2 27.2 NA NA NA
ARG D:107 E:130 177.0 0.787 T 57.3 28.7 177.0 0.787 0.0 HOH
 5.429
 NH2
 O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 ARG A:127 AAA:130 107.0 0.476 S -141.2 168.7 107.0 0.476 0.0 ACT
EDO
SO4
29N
HOH
 1.698
2.087
2.611
9.391
2.457
 HH11
C
HH12
HD3
HA
 H1
H22
O1
H16
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 ARG A:130 A:130 154.0 0.684 T 65.3 18.9