Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7998274 . C A CCDS92.1:NM_001561.5:c.325Ggt>Tgt_NP_001552.2:p.109G>C Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 GLY B:86 B:109 0.0 0.0 T 66.5 27.5 0.0 0.0 0.0
GLY D:86 D:109 1.0 0.013 T 69.3 23.1 NA NA NA
GLY F:86 F:109 3.0 0.04 S 104.2 8.6 NA NA NA
GLY H:86 H:109 0.0 0.0 T 70.7 14.7 NA NA NA
GLY J:86 J:109 2.0 0.027 T 75.4 19.2 NA NA NA
GLY L:86 L:109 0.0 0.0 T 73.5 6.3 NA NA NA
GLY N:86 N:109 0.0 0.0 T 64.5 21.7 NA NA NA
GLY P:86 P:109 1.0 0.013 T 70.3 27.2 NA NA NA
GLY R:86 R:109 0.0 0.0 T 83.4 5.3 NA NA NA
GLY T:86 T:109 0.0 0.0 T 69.6 23.6 NA NA NA
GLY V:86 V:109 4.0 0.053 T 70.9 19.6 NA NA NA
GLY X:86 X:109 0.0 0.0 T 65.2 34.7 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 GLY C:86 C:109 0.0 0.0 T 82.6 11.4 0.0 0.0 0.0 HOH
 5.496
 N
 O
GLY F:86 F:109 0.0 0.0 T 80.1 12.4 NA NA NA
GLY I:86 I:109 2.0 0.027 T 80.6 13.3 NA NA NA
GLY L:86 L:109 0.0 0.0 T 77.9 13.1 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 GLY D:85 X:109 0.0 0.0 T 93.4 -3.5 0.0 0.0 0.0 HOH
 5.866
 N
 O
GLY E:85 Y:109 4.0 0.053 T 80.3 -0.4 4.0 0.053 0.0 HOH
 7.787
 CA
 O
GLY F:85 Z:109 0.0 0.0 T 90.9 -0.5 0.0 0.0 0.0 HOH
 6.900
 O
 O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 GLY E:85 F:109 3.0 0.04 T 96.1 1.8 3.0 0.04 0.0
GLY F:85 C:109 2.0 0.027 T 79.7 22.4 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 GLY E:85 F:109 3.0 0.04 T 105.0 11.3 NA NA NA
GLY F:85 C:109 2.0 0.027 T 82.1 7.9 2.0 0.027 0.0
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 GLY D:87 D:109 5.0 0.067 S -70.3 -12.8 5.0 0.067 0.0 HOH
 7.804
 CA
 O
GLY E:87 F:109 2.0 0.027 S -69.8 -14.8 2.0 0.027 0.0 HOH
 4.606
 CA
 O
GLY F:87 E:109 5.0 0.067 S -70.8 -13.2 5.0 0.067 0.0 HOH
 6.445
 CA
 O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 GLY A:85 A:109 3.0 0.04 T 82.5 15.3 3.0 0.04 0.0 HOH
 9.257
 N
 O
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 GLY G:87 G:109 10.0 0.133 T -86.2 15.5 10.0 0.133 0.0
GLY H:87 H:109 13.0 0.173 T -85.5 16.3 NA NA NA
GLY I:87 J:109 12.0 0.16 T -86.1 15.2 NA NA NA
GLY J:87 K:109 21.0 0.28 360.0 -4.4 21.0 0.28 0.0 HOH
 9.293
 O
 O
GLY K:87 L:109 9.0 0.12 T -86.9 16.2 NA NA NA
GLY L:87 I:109 13.0 0.173 T -85.7 16.0 13.0 0.173 0.0 HOH
 8.515
 O
 O
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 GLY C:86 D:109 0.0 0.0 T 82.4 5.0 NA NA NA
GLY D:86 E:109 0.0 0.0 T 83.3 4.8 0.0 0.0 0.0 HOH
 7.593
 CA
 O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 GLY A:106 AAA:109 3.0 0.04 T 85.1 9.7 3.0 0.04 0.0 ACT
EDO
SO4
HOH
 9.201
4.443
5.710
4.241
 H
H
HA3
O
 OXT
HO1
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 GLY A:109 A:109 0.0 0.0 T 68.1 18.2