Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7998277 . G A CCDS92.1:NM_001561.5:c.322Caa>Taa_NP_001552.2:p.108Q>* Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 GLN B:85 B:108 102.0 0.567 T -61.1 149.5 102.0 0.567 0.0
GLN D:85 D:108 98.0 0.544 T -56.0 136.7 NA NA NA
GLN F:85 F:108 102.0 0.567 S 55.2 74.8 NA NA NA
GLN H:85 H:108 66.0 0.367 T -55.8 141.4 NA NA NA
GLN J:85 J:108 104.0 0.578 T -56.5 146.4 NA NA NA
GLN L:85 L:108 85.0 0.472 T -53.9 142.9 NA NA NA
GLN N:85 N:108 96.0 0.533 T -54.2 138.5 NA NA NA
GLN P:85 P:108 98.0 0.544 T -59.5 144.4 NA NA NA
GLN R:85 R:108 90.0 0.5 T -49.9 138.0 NA NA NA
GLN T:85 T:108 94.0 0.522 T -56.9 142.6 NA NA NA
GLN V:85 V:108 103.0 0.572 T -60.1 150.3 NA NA NA
GLN X:85 X:108 76.0 0.422 T -56.6 145.8 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 GLN C:85 C:108 76.0 0.422 T -56.7 142.4 76.0 0.422 0.0 HOH
 3.034
 N
 O
GLN F:85 F:108 109.0 0.606 T -58.3 142.7 NA NA NA
GLN I:85 I:108 88.0 0.489 T -57.1 143.9 NA NA NA
GLN L:85 L:108 97.0 0.539 T -55.4 146.5 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 GLN D:84 X:108 90.0 0.5 T -54.7 138.5 90.0 0.5 0.0 HOH
 4.991
 N
 O
GLN E:84 Y:108 85.0 0.472 T -61.7 149.8 85.0 0.472 0.0 HOH
 6.074
 NE2
 O
GLN F:84 Z:108 87.0 0.483 T -53.6 135.1 87.0 0.483 0.0 HOH
 8.776
 O
 O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 GLN E:84 F:108 91.0 0.506 T -65.5 131.5 91.0 0.506 0.0
GLN F:84 C:108 86.0 0.478 T -68.7 139.9 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 GLN E:84 F:108 80.0 0.444 T -58.1 119.4 NA NA NA
GLN F:84 C:108 105.0 0.583 T -76.8 141.8 105.0 0.583 0.0
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 GLN D:86 D:108 41.0 NA S -68.2 -57.5 41.0 NA NA HOH
 9.825
 C
 O
GLN E:86 F:108 117.0 0.65 S -69.8 -58.2 117.0 0.65 0.0 HOH
 6.942
 C
 O
GLN F:86 E:108 41.0 NA S -67.9 -58.2 41.0 NA NA HOH
 7.611
 O
 O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 GLN A:84 A:108 92.0 0.511 T -65.4 149.8 92.0 0.511 0.0 HOH
 6.761
 CB
 O
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 GLN G:86 G:108 46.0 NA T -30.3 -66.2 46.0 NA NA
GLN H:86 H:108 45.0 NA T -32.0 -64.5 NA NA NA
GLN I:86 J:108 46.0 NA T -31.8 -65.5 NA NA NA
GLN J:86 NA:NA DO NA DO DO DO NA NA NA
GLN K:86 L:108 45.0 NA T -31.1 -65.7 NA NA NA
GLN L:86 I:108 116.0 0.644 T -32.2 -64.4 116.0 0.644 0.0
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 GLN C:85 D:108 95.0 0.528 T -42.9 136.1 NA NA NA
GLN D:85 E:108 86.0 0.478 T -42.1 135.5 86.0 0.478 0.0 HOH
 6.863
 OE1
 O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 GLN A:105 AAA:108 78.0 0.433 T -43.4 136.5 78.0 0.433 0.0 ACT
EDO
SO4
SO4
HOH
 5.693
3.219
6.455
7.574
4.743
 HE22
HA
HE21
O
O
 OXT
HO1
O2
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 GLN A:108 A:108 92.0 0.511 T -57.5 145.3