Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7998289 . G A CCDS92.1:NM_001561.5:c.310Cag>Tag_NP_001552.2:p.104Q>* Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 GLN B:81 B:104 104.0 0.578 E -60.4 144.7 92.0 0.511 0.067 A:P41273:0.067
GLN D:81 D:104 113.0 0.628 E -65.7 159.4 NA NA NA
GLN F:81 F:104 122.0 0.678 E -76.1 161.3 NA NA NA
GLN H:81 H:104 97.0 0.539 E -74.4 165.3 NA NA NA
GLN J:81 J:104 120.0 0.667 E -59.2 150.4 NA NA NA
GLN L:81 L:104 117.0 0.65 -90.0 7.5 NA NA NA
GLN N:81 N:104 129.0 0.717 E -70.1 147.3 NA NA NA
GLN P:81 P:104 122.0 0.678 E -76.6 178.8 NA NA NA
GLN R:81 R:104 120.0 0.667 E -75.8 163.9 NA NA NA
GLN T:81 T:104 91.0 0.506 E -69.6 160.2 NA NA NA
GLN V:81 V:104 113.0 0.628 E -62.6 156.4 NA NA NA
GLN X:81 X:104 116.0 0.644 E -59.9 144.3 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 GLN C:81 C:104 88.0 0.489 E -67.6 136.5 87.0 0.483 0.006 B:None:0.006
 HOH
 2.805
 O
 O
GLN F:81 F:104 97.0 0.539 E -67.7 135.3 NA NA NA
GLN I:81 I:104 91.0 0.506 E -67.9 138.9 NA NA NA
GLN L:81 L:104 96.0 0.533 E -68.4 137.4 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 GLN D:80 X:104 125.0 0.694 E -57.2 142.8 107.0 0.594 0.1 A:P41273:0.1
 HOH
 2.524
 OE1
 O
GLN E:80 Y:104 125.0 0.694 E -58.7 143.6 103.0 0.572 0.122 B:P41273:0.122
 HOH
 7.274
 C
 O
GLN F:80 Z:104 125.0 0.694 E -53.9 138.6 106.0 0.589 0.105 C:P41273:0.106
 GOL
HOH
 7.122
9.802
 C
N
 O3
O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 GLN E:80 F:104 98.0 0.544 E -93.3 160.4 98.0 0.544 0.0 HOH
 8.178
 C
 O
GLN F:80 C:104 96.0 0.533 E -88.4 133.2 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 GLN E:80 F:104 84.0 0.467 E -67.9 133.2 NA NA NA
GLN F:80 C:104 94.0 0.522 E -67.6 135.7 85.0 0.472 0.05 B:None:0.05
 SO4
GOL
HOH
 3.212
9.194
8.473
 NE2
C
N
 O4
O1
O
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 GLN D:82 D:104 58.0 NA E -56.8 138.7 56.0 NA NA B:P41273:NA
GLN E:82 F:104 144.0 0.8 E -56.3 139.5 130.0 0.722 0.078 C:P41273:0.078
 HOH
 9.678
 OE1
 O
GLN F:82 E:104 140.0 0.778 E -57.0 139.4 138.0 0.767 0.011 A:P41273:0.011
 HOH
 3.110
 N
 O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 GLN A:80 A:104 87.0 0.483 E -67.4 143.0 87.0 0.483 0.0
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 GLN G:82 G:104 59.0 NA E -66.7 142.7 55.0 NA NA A:P41273:NA
 HOH
 8.032
 C
 O
GLN H:82 H:104 135.0 0.75 E -66.2 142.0 NA NA NA
GLN I:82 J:104 57.0 NA E -66.4 142.4 NA NA NA
GLN J:82 K:104 141.0 0.783 E -65.9 142.0 119.0 0.661 0.122 B:P41273:0.122
GLN K:82 L:104 132.0 0.733 E -67.2 142.5 NA NA NA
GLN L:82 I:104 134.0 0.744 E -66.2 142.1 131.0 0.728 0.016 D:P41273:0.017
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 GLN C:81 D:104 99.0 0.55 E -57.0 139.6 NA NA NA
GLN D:81 E:104 121.0 0.672 E -57.2 139.8 121.0 0.672 0.0 HOH
 2.638
 OE1
 O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 GLN A:101 AAA:104 84.0 0.467 E -58.6 141.2 50.0 0.278 0.189 B:None:0.189
 ACT
EDO
SO4
29N
HOH
 8.015
4.765
9.017
6.741
2.302
 C
O
HA
H
HE21
 H3
HO2
O4
C16
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 GLN A:104 A:104 113.0 0.628 E -59.9 143.2