Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7998300 . C A CCDS92.1:NM_001561.5:c.299aGc>aTc_NP_001552.2:p.100S>I Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 SER B:77 B:100 84.0 0.73 -74.3 -34.7 53.0 0.461 0.269 A:P41273:0.27
SER D:77 D:100 90.0 0.783 -64.6 -11.2 NA NA NA
SER F:77 F:100 76.0 0.661 -80.6 -26.0 NA NA NA
SER H:77 H:100 85.0 0.739 -76.7 -32.4 NA NA NA
SER J:77 J:100 94.0 0.817 -77.9 -14.5 NA NA NA
SER L:77 L:100 77.0 0.67 -79.3 -38.4 NA NA NA
SER N:77 N:100 84.0 0.73 -65.2 -24.0 NA NA NA
SER P:77 P:100 87.0 0.757 -70.2 -24.3 NA NA NA
SER R:77 R:100 82.0 0.713 -72.8 -17.9 NA NA NA
SER T:77 T:100 84.0 0.73 -65.2 -19.1 NA NA NA
SER V:77 V:100 98.0 0.852 -77.8 -42.7 NA NA NA
SER X:77 X:100 91.0 0.791 -70.5 -39.2 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 SER C:77 C:100 62.0 0.539 -76.9 -16.7 14.0 0.122 0.417 B:None:0.417
 HOH
 2.592
 OG
 O
SER F:77 F:100 60.0 0.522 -79.7 -10.1 NA NA NA
SER I:77 I:100 65.0 0.565 -79.2 -12.2 NA NA NA
SER L:77 L:100 63.0 0.548 -81.3 -14.8 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 SER D:76 X:100 81.0 0.704 -75.5 -7.0 52.0 0.452 0.252 A:P41273:0.252
 HOH
 7.077
 O
 O
SER E:76 Y:100 81.0 0.704 -75.8 -21.2 53.0 0.461 0.243 B:P41273:0.243
 ACT
HOH
 9.623
7.083
 CA
O
 CH3
O
SER F:76 Z:100 81.0 0.704 -66.7 -37.2 54.0 0.47 0.234 C:P41273:0.235
 HOH
 6.972
 O
 O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 SER E:76 F:100 78.0 0.678 -89.6 -61.4 78.0 0.678 0.0
SER F:76 C:100 64.0 0.557 -63.5 -52.8 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 SER E:76 F:100 71.0 0.617 -76.0 -25.1 NA NA NA
SER F:76 C:100 53.0 0.461 -77.3 -21.4 14.0 0.122 0.339 B:None:0.339
 SO4
SO4
GOL
HOH
 7.273
6.476
9.418
7.954
 N
O
N
O
 O3
O1
O2
O
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 SER D:78 D:100 78.0 0.678 -69.1 -33.4 48.0 0.417 0.261 B:P41273:0.261
 HOH
 3.875
 CA
 O
SER E:78 F:100 77.0 0.67 -68.8 -34.3 48.0 0.417 0.253 C:P41273:0.252
 HOH
 6.492
 N
 O
SER F:78 E:100 79.0 0.687 -70.1 -31.2 47.0 0.409 0.278 A:P41273:0.278
 HOH
 3.654
 CA
 O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 SER A:76 A:100 72.0 0.626 -70.5 -38.9 72.0 0.626 0.0 HOH
 4.798
 O
 O
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 SER G:78 G:100 79.0 0.687 -71.2 -35.9 55.0 0.478 0.209 A:P41273:0.209
 HOH
 5.489
 N
 O
SER H:78 H:100 77.0 0.67 -71.3 -36.1 NA NA NA
SER I:78 J:100 75.0 0.652 -71.3 -35.9 NA NA NA
SER J:78 K:100 76.0 0.661 -71.0 -35.9 50.0 0.435 0.226 B:P41273:0.226
SER K:78 L:100 76.0 0.661 -71.0 -35.9 NA NA NA
SER L:78 I:100 77.0 0.67 -71.3 -35.8 52.0 0.452 0.218 D:P41273:0.217
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 SER C:77 D:100 73.0 0.635 -74.5 -17.1 NA NA NA
SER D:77 E:100 81.0 0.704 -75.2 -17.0 81.0 0.704 0.0 HOH
 6.257
 N
 O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 SER A:97 AAA:100 70.0 0.609 -66.9 -15.0 14.0 0.122 0.487 B:None:0.487
 SO4
29N
HOH
 8.962
2.914
2.720
 N
HB2
HB3
 O3
H20
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 SER A:100 A:100 79.0 0.687 -68.3 -24.0