Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7998823 . C A CCDS92.1:NM_001561.5:c.166Gca>Tca_NP_001552.2:p.56A>S Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 ALA B:33 B:56 60.0 0.522 S -152.5 141.5 60.0 0.522 0.0
ALA D:33 D:56 49.0 0.426 S -80.9 152.6 NA NA NA
ALA F:33 F:56 46.0 0.4 S -127.3 175.2 NA NA NA
ALA H:33 H:56 56.0 0.487 S -152.5 142.4 NA NA NA
ALA J:33 J:56 82.0 0.713 -153.8 360.0 NA NA NA
ALA L:33 L:56 59.0 0.513 S -168.5 -178.4 NA NA NA
ALA N:33 N:56 59.0 0.513 S -137.9 117.8 NA NA NA
ALA P:33 P:56 69.0 0.6 S -152.0 146.6 NA NA NA
ALA R:33 R:56 49.0 0.426 S -91.2 -163.6 NA NA NA
ALA T:33 T:56 44.0 0.383 S -119.4 174.8 NA NA NA
ALA V:33 V:56 63.0 0.548 -153.1 -171.2 NA NA NA
ALA X:33 X:56 67.0 0.583 S -140.7 120.0 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 ALA C:33 C:56 48.0 0.417 S -139.7 155.2 48.0 0.417 0.0 HOH
 2.717
 O
 O
ALA F:33 NA:NA DO NA DO DO DO NA NA NA
ALA I:33 I:56 82.0 0.713 S -41.8 150.1 NA NA NA
ALA L:33 L:56 49.0 0.426 S -143.2 148.7 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 ALA D:32 X:56 48.0 0.417 S -128.9 160.7 47.0 0.409 0.008 C:P41273:0.009
ALA E:32 Y:56 49.0 0.426 S -132.5 166.7 27.0 0.235 0.191 A:P41273:0.191
ALA F:32 Z:56 51.0 0.443 S -120.9 165.0 51.0 0.443 0.0 HOH
 2.934
 O
 O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 ALA E:32 F:56 47.0 0.409 S -127.4 169.6 47.0 0.409 0.0
ALA F:32 C:56 51.0 0.443 S -125.3 -166.8 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 ALA E:32 F:56 96.0 0.835 S -89.4 -39.4 NA NA NA
ALA F:32 C:56 69.0 0.6 S -115.0 -41.6 69.0 0.6 0.0 HOH
 2.912
 O
 O
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 ALA D:34 D:56 46.0 0.4 S -120.6 158.4 45.0 0.391 0.009 C:P41273:0.009
 HOH
 9.690
 O
 O
ALA E:34 F:56 45.0 0.391 S -121.4 157.1 38.0 0.33 0.061 A:P41273:0.061
 HOH
 3.878
 CB
 O
ALA F:34 E:56 45.0 0.391 S -121.8 158.7 43.0 0.374 0.017 B:P41273:0.017
 HOH
 2.856
 O
 O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 ALA A:32 A:56 37.0 0.322 S -90.3 -161.6 37.0 0.322 0.0
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 ALA G:34 G:56 49.0 0.426 S -132.5 162.8 49.0 0.426 0.0
ALA H:34 H:56 69.0 0.6 -132.3 167.2 NA NA NA
ALA I:34 J:56 49.0 0.426 S -132.0 168.8 NA NA NA
ALA J:34 K:56 48.0 0.417 S -132.4 162.7 48.0 0.417 0.0 HOH
 9.089
 O
 O
ALA K:34 L:56 49.0 0.426 S -132.6 162.5 NA NA NA
ALA L:34 I:56 94.0 0.817 -132.9 360.0 63.0 0.548 0.269 A:P41273:0.27
 HOH
 5.145
 O
 O
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 ALA C:33 D:56 52.0 0.452 S -114.6 165.5 NA NA NA
ALA D:33 E:56 53.0 0.461 S -114.8 166.7 53.0 0.461 0.0 HOH
 2.766
 O
 O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 ALA A:53 AAA:56 51.0 0.443 S -135.5 166.2 51.0 0.443 0.0 NA
HOH
 8.547
3.164
 N
O
 NA
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 ALA A:56 A:56 48.0 0.417 S -117.5 155.8