Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 7998849 . G A CCDS92.1:NM_001561.5:c.140cCc>cTc_NP_001552.2:p.47P>L Homo sapiens TNF receptor superfamily member 9 (TNFRSF9), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6a3v 2 Q07011 98.75 7e-113 X-RAY
 2018-10-10 PRO B:24 B:47 107.0 0.738 E -65.0 161.2 107.0 0.738 0.0
PRO D:24 D:47 100.0 0.69 E -76.7 174.3 NA NA NA
PRO F:24 F:47 102.0 0.703 E -81.6 158.2 NA NA NA
PRO H:24 H:47 100.0 0.69 E -65.4 176.5 NA NA NA
PRO J:24 J:47 114.0 0.786 -70.5 139.8 NA NA NA
PRO L:24 L:47 104.0 0.717 -62.9 174.4 NA NA NA
PRO N:24 N:47 103.0 0.71 -88.8 176.6 NA NA NA
PRO P:24 P:47 114.0 0.786 -63.4 144.4 NA NA NA
PRO R:24 R:47 105.0 0.724 -82.7 175.4 NA NA NA
PRO T:24 T:47 106.0 0.731 -84.5 176.0 NA NA NA
PRO V:24 V:47 108.0 0.745 -78.3 151.5 NA NA NA
PRO X:24 X:47 107.0 0.738 -80.5 177.0 NA NA NA
6a3w 3 Q07011 98.75 7e-113 X-RAY
 2018-10-10 PRO C:24 C:47 101.0 0.697 E -69.5 151.4 101.0 0.697 0.0 HOH
 3.389
 CD
 O
PRO F:24 NA:NA DO NA DO DO DO NA NA NA
PRO I:24 I:47 105.0 0.724 E -68.9 149.2 NA NA NA
PRO L:24 L:47 96.0 0.662 B -63.8 154.3 NA NA NA
6mgp 2 Q07011 98.58 3e-98 X-RAY
 2018-11-14 PRO D:23 X:47 98.0 0.676 E -60.0 148.3 98.0 0.676 0.0 ACT
 9.870
 O
 OXT
PRO E:23 Y:47 100.0 0.69 E -64.8 148.0 100.0 0.69 0.0 HOH
 5.224
 CD
 O
PRO F:23 Z:47 93.0 0.641 E -59.8 147.7 93.0 0.641 0.0 HOH
 2.807
 O
 O
6mhr 3 Q07011 98.58 3e-98 X-RAY
 2018-11-21 PRO E:23 F:47 94.0 0.648 E -66.0 168.9 93.0 0.641 0.007 B:None:0.007
PRO F:23 C:47 97.0 0.669 E -69.0 149.2 NA NA NA
6mi2 3 Q07011 98.58 4e-98 X-RAY
 2018-11-21 PRO E:23 F:47 101.0 0.697 E -68.7 155.1 NA NA NA
PRO F:23 C:47 90.0 0.621 E -66.8 155.2 90.0 0.621 0.0 SO4
HOH
 7.873
7.728
 CB
CD
 O1
O
6cpr 2 Q07011 100.0 3e-97 X-RAY
 2018-05-09 PRO D:25 D:47 99.0 0.683 E -57.6 150.1 99.0 0.683 0.0 NA
HOH
 9.072
3.513
 O
CB
 NA
O
PRO E:25 F:47 100.0 0.69 E -60.6 151.3 100.0 0.69 0.0 HOH
 3.806
 CB
 O
PRO F:25 E:47 99.0 0.683 E -57.7 152.4 99.0 0.683 0.0 NA
HOH
 3.787
4.203
 CB
CB
 NA
O
7d4b 1 Q07011 100.0 3e-97 X-RAY
 2021-07-14 PRO A:23 A:47 93.0 0.641 E -68.1 159.2 93.0 0.641 0.0
6cu0 2 Q07011 99.28 4e-96 X-RAY
 2018-05-09 PRO G:25 G:47 99.0 0.683 E -73.0 155.6 99.0 0.683 0.0
PRO H:25 H:47 100.0 0.69 E -73.4 155.7 NA NA NA
PRO I:25 J:47 99.0 0.683 E -73.3 155.2 NA NA NA
PRO J:25 K:47 99.0 0.683 E -73.3 155.4 99.0 0.683 0.0 HOH
 7.884
 N
 O
PRO K:25 L:47 101.0 0.697 E -73.1 155.6 NA NA NA
PRO L:25 I:47 96.0 0.662 E -73.2 155.8 96.0 0.662 0.0 HOH
 5.718
 N
 O
6bwv 2 Q07011 97.81 4e-94 X-RAY
 2018-05-09 PRO C:24 D:47 96.0 0.662 E -65.4 153.6 NA NA NA
PRO D:24 E:47 100.0 0.69 E -65.5 153.9 100.0 0.69 0.0 HOH
 2.938
 O
 O
6y8k 1 Q07011 90.2 5e-94 X-RAY
 2021-02-03 PRO A:44 AAA:47 97.0 0.669 B -66.0 169.8 97.0 0.669 0.0 HOH
 2.996
 HB2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q07011-f1 1 Q07011 100.0 0.0 PRO A:47 A:47 95.0 0.655 E -62.9 148.0