Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 100661875 | . | C | A | CCDS767.1:NM_001918.3:c.1385cGc>cTc_NP_001909.3:p.462R>L | Homo sapiens dihydrolipoamide branched chain transacylase E2 (DBT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2ihw | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:242 | A:401 | 158.0 | 0.702 | H | -50.8 | -46.3 | 127.0 | 0.564 | 0.138 |
C:P11181:0.138 |
ACT HOH |
9.578 6.171 |
NH2 N |
O O |
|
ARG | B:242 | B:401 | 157.0 | 0.698 | H | -73.7 | -41.3 | 129.0 | 0.573 | 0.125 |
A:P11181:0.124 |
ACT HOH |
9.415 6.081 |
NH2 N |
OXT O |
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ARG | C:242 | C:401 | 160.0 | 0.711 | H | -62.8 | -33.9 | 130.0 | 0.578 | 0.133 |
B:P11181:0.133 |
ACT HOH |
9.492 5.906 |
NH2 N |
OXT O |
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ARG | D:242 | D:401 | 162.0 | 0.72 | H | -56.3 | -36.3 | 127.0 | 0.564 | 0.156 |
F:P11181:0.156 |
ACT HOH |
9.849 5.472 |
NH2 NH2 |
O O |
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ARG | E:242 | E:401 | 167.0 | 0.742 | H | -57.7 | -46.5 | 136.0 | 0.604 | 0.138 |
D:P11181:0.138 |
ACT HOH |
9.671 6.103 |
NH2 N |
O O |
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ARG | F:242 | F:401 | 158.0 | 0.702 | H | -61.2 | -40.6 | 129.0 | 0.573 | 0.129 |
E:P11181:0.129 |
ACT HOH |
9.780 6.232 |
NH2 N |
O O |
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ARG | G:242 | G:401 | 168.0 | 0.747 | H | -59.1 | -46.3 | 138.0 | 0.613 | 0.134 |
G:P11181:0.133 |
HOH |
6.085 |
N |
O |
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ARG | H:242 | H:401 | 161.0 | 0.716 | H | -70.5 | -31.4 | 137.0 | 0.609 | 0.107 |
H:P11181:0.107 |
ACT HOH |
9.458 6.176 |
NH1 N |
O O |
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2ii3 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:242 | A:401 | 153.0 | 0.68 | H | -59.7 | -43.1 | 120.0 | 0.533 | 0.147 |
C:P11181:0.147 |
ACT CAO HOH |
9.390 6.988 2.706 |
NH1 NH2 NE |
OXT N8P O |
|
ARG | B:242 | B:401 | 153.0 | 0.68 | H | -67.0 | -42.6 | 126.0 | 0.56 | 0.12 |
A:P11181:0.12 |
CAO HOH |
6.938 2.388 |
NH2 NH2 |
O5P O |
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ARG | C:242 | C:401 | 157.0 | 0.698 | H | -68.1 | -37.4 | 127.0 | 0.564 | 0.134 |
B:P11181:0.133 |
ACT CAO HOH |
9.554 7.091 2.616 |
NH2 NH2 O |
CH3 N8P O |
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ARG | D:242 | D:401 | 159.0 | 0.707 | H | -57.4 | -43.4 | 134.0 | 0.596 | 0.111 |
F:P11181:0.111 |
ACT CAO HOH |
9.759 6.761 2.665 |
NH1 NH2 NE |
O N8P O |
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ARG | E:242 | E:401 | 162.0 | 0.72 | H | -62.1 | -44.0 | 135.0 | 0.6 | 0.12 |
D:P11181:0.12 |
ACT CAO ACT HOH |
9.938 6.805 6.987 2.692 |
NH1 NH2 NH1 O |
CH3 O9P O O |
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ARG | F:242 | F:401 | 156.0 | 0.693 | H | -56.7 | -45.3 | 97.0 | 0.431 | 0.262 |
E:P11181:0.262 |
CAO HOH |
6.998 2.708 |
NH2 O |
O5P O |
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ARG | G:242 | G:401 | 154.0 | 0.684 | H | -61.5 | -47.8 | 98.0 | 0.436 | 0.248 |
G:P11181:0.249 |
CAO HOH |
6.969 2.502 |
NH2 NE |
O9P O |
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ARG | H:242 | H:401 | 155.0 | 0.689 | H | -61.8 | -39.8 | 130.0 | 0.578 | 0.111 |
H:P11181:0.111 |
ACT ACT CAO HOH |
6.800 9.633 6.684 2.428 |
NH2 NH2 NH2 NE |
CH3 CH3 N8P O |
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2ii4 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:242 | A:401 | 141.0 | 0.627 | H | -62.8 | -37.8 | 88.0 | 0.391 | 0.236 |
C:P11181:0.236 |
COA HOH |
6.848 2.483 |
NH2 NE |
O5P O |
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ARG | B:242 | B:401 | 145.0 | 0.644 | H | -67.6 | -37.3 | 93.0 | 0.413 | 0.231 |
A:P11181:0.231 |
COA HOH |
7.194 2.456 |
NH2 NE |
O9P O |
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ARG | C:242 | C:401 | 141.0 | 0.627 | H | -74.1 | -41.8 | 87.0 | 0.387 | 0.24 |
B:P11181:0.24 |
COA HOH |
6.909 2.299 |
NH2 NE |
O5P O |
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ARG | D:242 | D:401 | 145.0 | 0.644 | H | -65.8 | -30.9 | 94.0 | 0.418 | 0.226 |
F:P11181:0.227 |
COA HOH |
6.998 2.510 |
NH2 NE |
O5P O |
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ARG | E:242 | E:401 | 167.0 | 0.742 | H | -67.3 | -32.6 | 116.0 | 0.516 | 0.226 |
D:P11181:0.227 |
COA HOH |
6.790 4.141 |
NH2 CA |
C7P O |
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ARG | F:242 | F:401 | 140.0 | 0.622 | H | -55.5 | -46.8 | 89.0 | 0.396 | 0.226 |
E:P11181:0.227 |
COA HOH |
7.051 2.441 |
NH2 NE |
O5P O |
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ARG | G:242 | G:401 | 143.0 | 0.636 | H | -63.5 | -45.2 | 91.0 | 0.404 | 0.232 |
G:P11181:0.231 |
COA HOH |
7.098 2.522 |
NH2 NE |
O5P O |
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ARG | H:242 | H:401 | 138.0 | 0.613 | H | -70.4 | -39.5 | 85.0 | 0.378 | 0.235 |
H:P11181:0.236 |
COA HOH |
6.857 2.154 |
NH2 NE |
O5P O |
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2ii5 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:242 | A:401 | 156.0 | 0.693 | H | -60.1 | -34.1 | 127.0 | 0.564 | 0.129 |
C:P11181:0.129 |
ACT CO6 HOH |
9.654 9.593 6.134 |
NH2 NH1 N |
O O2A O |
|
ARG | B:242 | B:401 | 154.0 | 0.684 | H | -75.3 | -39.2 | 127.0 | 0.564 | 0.12 |
A:P11181:0.12 |
ACT CO6 HOH |
9.457 9.641 6.188 |
NH2 NH1 N |
OXT O2A O |
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ARG | C:242 | C:401 | 157.0 | 0.698 | H | -70.8 | -41.4 | 128.0 | 0.569 | 0.129 |
B:P11181:0.129 |
ACT HOH |
9.342 6.175 |
NH2 N |
OXT O |
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ARG | D:242 | D:401 | 159.0 | 0.707 | H | -63.5 | -36.6 | 132.0 | 0.587 | 0.12 |
F:P11181:0.12 |
ACT HOH |
9.593 5.319 |
NH2 NH2 |
CH3 O |
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ARG | E:242 | E:401 | 164.0 | 0.729 | H | -58.4 | -40.7 | 135.0 | 0.6 | 0.129 |
D:P11181:0.129 |
CO6 HOH |
9.181 5.995 |
NH2 N |
O1A O |
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ARG | F:242 | F:401 | 154.0 | 0.684 | H | -55.5 | -41.8 | 127.0 | 0.564 | 0.12 |
E:P11181:0.12 |
ACT CO6 HOH |
9.624 6.777 6.170 |
NH2 NH2 N |
O N8P O |
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ARG | G:242 | G:401 | 163.0 | 0.724 | H | -59.8 | -49.4 | 133.0 | 0.591 | 0.133 |
G:P11181:0.133 |
ACT CO6 HOH |
9.937 9.794 5.982 |
NH2 NH1 N |
OXT O2A O |
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ARG | H:242 | H:401 | 153.0 | 0.68 | H | -68.0 | -32.9 | 131.0 | 0.582 | 0.098 |
H:P11181:0.098 |
ACT CO6 HOH |
9.532 9.570 3.944 |
NH1 NH2 NH1 |
O O2A O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p11182-f1 | 1 | P11182 | 100.0 | 0.0 | ARG | A:462 | A:462 | 149.0 | 0.662 | H | -62.7 | -43.5 |