Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 100661974 | . | A | C | CCDS767.1:NM_001918.3:c.1286aTt>aGt_NP_001909.3:p.429I>S | Homo sapiens dihydrolipoamide branched chain transacylase E2 (DBT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2ihw | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | LEU | A:209 | A:368 | 55.0 | 0.324 | E | -127.9 | 153.6 | 12.0 | 0.071 | 0.253 |
B:P11181:0.253 |
CL HOH |
4.986 4.002 |
CD1 CD1 |
CL O |
|
LEU | B:209 | B:368 | 49.0 | 0.288 | E | -123.4 | 153.2 | 13.0 | 0.076 | 0.212 |
C:P11181:0.212 |
CL HOH |
4.688 4.324 |
CD1 CD1 |
CL O |
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LEU | C:209 | C:368 | 57.0 | 0.335 | E | -122.9 | 150.4 | 13.0 | 0.076 | 0.259 |
A:P11181:0.259 |
CL HOH |
4.646 3.707 |
CD1 CD2 |
CL O |
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LEU | D:209 | D:368 | 51.0 | 0.3 | E | -118.5 | 157.9 | 13.0 | 0.076 | 0.224 |
E:P11181:0.224 |
CL HOH |
4.967 4.595 |
CD1 CD1 |
CL O |
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LEU | E:209 | E:368 | 49.0 | 0.288 | E | -122.0 | 148.9 | 11.0 | 0.065 | 0.223 |
F:P11181:0.224 |
CL HOH |
4.476 4.147 |
CD1 CD1 |
CL O |
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LEU | F:209 | F:368 | 53.0 | 0.312 | E | -130.2 | 145.6 | 13.0 | 0.076 | 0.236 |
D:P11181:0.235 |
CL HOH |
5.034 2.981 |
CD1 CD2 |
CL O |
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LEU | G:209 | G:368 | 52.0 | 0.306 | E | -133.1 | 153.7 | 12.0 | 0.071 | 0.235 |
G:P11181:0.235 |
CL CL CL |
5.195 5.195 5.195 |
CD1 CD1 CD1 |
CL CL CL |
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LEU | H:209 | H:368 | 50.0 | 0.294 | E | -113.1 | 149.6 | 12.0 | 0.071 | 0.223 |
H:P11181:0.224 |
CL CL CL HOH |
4.558 4.558 4.558 4.564 |
CD1 CD1 CD1 CD1 |
CL CL CL O |
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2ii3 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | LEU | A:209 | A:368 | 54.0 | 0.318 | E | -129.6 | 150.9 | 13.0 | 0.076 | 0.242 |
B:P11181:0.241 |
CL HOH |
5.167 3.666 |
CD1 CD1 |
CL O |
|
LEU | B:209 | B:368 | 46.0 | 0.271 | E | -132.8 | 151.3 | 13.0 | 0.076 | 0.195 |
C:P11181:0.194 |
CL HOH |
4.610 3.654 |
CD1 CD2 |
CL O |
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LEU | C:209 | C:368 | 53.0 | 0.312 | E | -131.9 | 148.6 | 13.0 | 0.076 | 0.236 |
A:P11181:0.235 |
CL HOH |
4.901 3.778 |
CD1 CA |
CL O |
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LEU | D:209 | D:368 | 53.0 | 0.312 | E | -132.4 | 146.4 | 13.0 | 0.076 | 0.236 |
E:P11181:0.235 |
CL HOH |
4.959 3.777 |
CD1 CD2 |
CL O |
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LEU | E:209 | E:368 | 55.0 | 0.324 | E | -123.7 | 145.5 | 14.0 | 0.082 | 0.242 |
F:P11181:0.241 |
CL HOH |
4.644 3.715 |
CD1 CD2 |
CL O |
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LEU | F:209 | F:368 | 47.0 | 0.276 | E | -129.6 | 145.2 | 10.0 | 0.059 | 0.217 |
D:P11181:0.218 |
CL HOH |
4.787 3.676 |
CD1 CD2 |
CL O |
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LEU | G:209 | G:368 | 49.0 | 0.288 | E | -130.4 | 147.5 | 11.0 | 0.065 | 0.223 |
G:P11181:0.224 |
CL CL CL HOH |
4.891 4.872 4.871 3.576 |
CD1 CD1 CD1 CD2 |
CL CL CL O |
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LEU | H:209 | H:368 | 58.0 | 0.341 | E | -124.0 | 152.0 | 16.0 | 0.094 | 0.247 |
H:P11181:0.247 |
CL CL CL HOH |
4.751 4.758 4.776 3.715 |
CD1 CD1 CD1 CA |
CL CL CL O |
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2ii4 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | LEU | A:209 | A:368 | 48.0 | 0.282 | E | -126.6 | 147.3 | 11.0 | 0.065 | 0.217 |
B:P11181:0.218 |
CL HOH |
4.925 3.659 |
CD1 CA |
CL O |
|
LEU | B:209 | B:368 | 49.0 | 0.288 | E | -128.1 | 153.2 | 13.0 | 0.076 | 0.212 |
C:P11181:0.212 |
CL HOH |
4.727 3.718 |
CD1 CD2 |
CL O |
||||||||
LEU | C:209 | C:368 | 47.0 | 0.276 | E | -126.5 | 147.1 | 12.0 | 0.071 | 0.205 |
A:P11181:0.206 |
CL HOH |
4.978 3.544 |
CD1 CD2 |
CL O |
||||||||
LEU | D:209 | D:368 | 51.0 | 0.3 | E | -128.2 | 147.1 | 13.0 | 0.076 | 0.224 |
E:P11181:0.224 |
CL HOH |
4.769 4.552 |
CD1 CD1 |
CL O |
||||||||
LEU | E:209 | E:368 | 56.0 | 0.329 | E | -127.0 | 151.0 | 13.0 | 0.076 | 0.253 |
F:P11181:0.253 |
CL HOH |
4.604 3.731 |
CD1 CD2 |
CL O |
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LEU | F:209 | F:368 | 43.0 | 0.253 | E | -126.1 | 148.4 | 8.0 | 0.047 | 0.206 |
D:P11181:0.206 |
CL HOH |
4.860 3.533 |
CD1 CA |
CL O |
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LEU | G:209 | G:368 | 52.0 | 0.306 | E | -130.1 | 153.7 | 12.0 | 0.071 | 0.235 |
G:P11181:0.235 |
CL CL CL HOH |
4.971 4.943 4.934 7.247 |
CD1 CD1 CD1 CD1 |
CL CL CL O |
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LEU | H:209 | H:368 | 52.0 | 0.306 | E | -128.7 | 154.0 | 14.0 | 0.082 | 0.224 |
H:P11181:0.224 |
CL CL CL HOH |
4.720 4.726 4.768 3.978 |
CD1 CD1 CD1 CA |
CL CL CL O |
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2ii5 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | LEU | A:209 | A:368 | 53.0 | 0.312 | E | -126.3 | 157.2 | 12.0 | 0.071 | 0.241 |
B:P11181:0.241 |
CL HOH |
4.827 4.136 |
CD1 CD1 |
CL O |
|
LEU | B:209 | B:368 | 48.0 | 0.282 | E | -133.5 | 154.9 | 14.0 | 0.082 | 0.2 |
C:P11181:0.2 |
CL HOH |
4.788 4.358 |
CD1 CD1 |
CL O |
||||||||
LEU | C:209 | C:368 | 55.0 | 0.324 | E | -137.0 | 150.8 | 13.0 | 0.076 | 0.248 |
A:P11181:0.247 |
CL HOH |
4.815 3.918 |
CD1 CA |
CL O |
||||||||
LEU | D:209 | D:368 | 51.0 | 0.3 | E | -136.1 | 148.4 | 11.0 | 0.065 | 0.235 |
E:P11181:0.235 |
CL HOH |
4.728 4.671 |
CD1 CD1 |
CL O |
||||||||
LEU | E:209 | E:368 | 54.0 | 0.318 | E | -130.0 | 151.7 | 15.0 | 0.088 | 0.23 |
F:P11181:0.229 |
CL HOH |
4.813 4.413 |
CD1 CD1 |
CL O |
||||||||
LEU | F:209 | F:368 | 50.0 | 0.294 | E | -129.5 | 145.6 | 11.0 | 0.065 | 0.229 |
D:P11181:0.229 |
CL HOH |
4.894 3.602 |
CD1 CD2 |
CL O |
||||||||
LEU | G:209 | G:368 | 55.0 | 0.324 | E | -131.6 | 153.3 | 13.0 | 0.076 | 0.248 |
G:P11181:0.247 |
CL CL CL |
4.881 4.880 4.880 |
CD1 CD1 CD1 |
CL CL CL |
||||||||
LEU | H:209 | H:368 | 53.0 | 0.312 | E | -123.4 | 154.7 | 14.0 | 0.082 | 0.23 |
H:P11181:0.229 |
CL CL CL HOH |
4.668 4.668 4.668 4.317 |
CD1 CD1 CD1 CD1 |
CL CL CL O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p11182-f1 | 1 | P11182 | 100.0 | 0.0 | ILE | A:429 | A:429 | 46.0 | 0.263 | E | -132.6 | 149.5 |