Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 100680441 | . | G | A | CCDS767.1:NM_001918.3:c.871Cga>Tga_NP_001909.3:p.291R>* | Homo sapiens dihydrolipoamide branched chain transacylase E2 (DBT), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2ihw | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:71 | A:230 | 47.0 | 0.209 | H | -61.1 | -45.5 | 47.0 | 0.209 | 0.0 |
HOH |
3.112 |
NH1 |
O |
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ARG | B:71 | B:230 | 49.0 | 0.218 | H | -64.1 | -38.4 | 49.0 | 0.218 | 0.0 |
HOH |
7.537 |
NE |
O |
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ARG | C:71 | C:230 | 48.0 | 0.213 | H | -57.6 | -43.2 | 48.0 | 0.213 | 0.0 |
HOH |
3.166 |
NH1 |
O |
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ARG | D:71 | D:230 | 41.0 | 0.182 | H | -53.7 | -40.6 | 41.0 | 0.182 | 0.0 |
HOH |
3.146 |
NH1 |
O |
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ARG | E:71 | E:230 | 44.0 | 0.196 | H | -58.1 | -43.3 | 44.0 | 0.196 | 0.0 |
HOH |
7.937 |
NH2 |
O |
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ARG | F:71 | F:230 | 50.0 | 0.222 | H | -65.1 | -35.4 | 50.0 | 0.222 | 0.0 |
HOH |
9.092 |
N |
O |
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ARG | G:71 | G:230 | 51.0 | 0.227 | H | -62.5 | -44.6 | 51.0 | 0.227 | 0.0 |
HOH |
7.157 |
NE |
O |
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ARG | H:71 | H:230 | 48.0 | 0.213 | H | -67.2 | -28.8 | 48.0 | 0.213 | 0.0 |
HOH |
7.107 |
NE |
O |
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2ii3 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:71 | A:230 | 43.0 | 0.191 | H | -61.7 | -41.6 | 43.0 | 0.191 | 0.0 |
CAO ACT HOH |
2.416 8.356 2.870 |
NH2 N NH1 |
O8A OXT O |
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ARG | B:71 | B:230 | 44.0 | 0.196 | H | -59.4 | -40.6 | 44.0 | 0.196 | 0.0 |
ACT CAO HOH |
8.252 2.848 3.140 |
N NH2 NH1 |
O O7A O |
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ARG | C:71 | C:230 | 47.0 | 0.209 | H | -58.9 | -39.2 | 47.0 | 0.209 | 0.0 |
ACT CAO HOH |
8.535 2.473 2.989 |
N NH2 NH1 |
OXT O8A O |
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ARG | D:71 | D:230 | 45.0 | 0.2 | H | -58.9 | -36.1 | 45.0 | 0.2 | 0.0 |
CAO ACT HOH |
2.718 8.304 2.859 |
NH2 N NH1 |
O8A OXT O |
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ARG | E:71 | E:230 | 43.0 | 0.191 | H | -57.7 | -48.4 | 43.0 | 0.191 | 0.0 |
ACT CAO HOH |
8.298 2.352 3.305 |
N NH2 NH2 |
OXT O8A O |
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ARG | F:71 | F:230 | 46.0 | 0.204 | H | -62.5 | -40.9 | 46.0 | 0.204 | 0.0 |
ACT CAO HOH |
8.897 2.499 5.695 |
N NH2 NH1 |
O O8A O |
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ARG | G:71 | G:230 | 44.0 | 0.196 | H | -63.5 | -42.3 | 44.0 | 0.196 | 0.0 |
CAO ACT HOH |
2.608 8.640 6.386 |
NH2 N NE |
O8A O O |
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ARG | H:71 | H:230 | 28.0 | 0.124 | H | -69.9 | -33.9 | 28.0 | 0.124 | 0.0 |
CAO ACT HOH |
2.616 8.491 5.860 |
NH2 N NH2 |
O8A O O |
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2ii4 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:71 | A:230 | 44.0 | 0.196 | H | -60.5 | -42.0 | 44.0 | 0.196 | 0.0 |
COA HOH |
2.647 6.133 |
NH2 NE |
O8A O |
||
ARG | B:71 | B:230 | 48.0 | 0.213 | H | -65.0 | -34.7 | 48.0 | 0.213 | 0.0 |
COA HOH |
2.750 6.160 |
NH2 NE |
O8A O |
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ARG | C:71 | C:230 | 48.0 | 0.213 | H | -58.5 | -43.6 | 48.0 | 0.213 | 0.0 |
COA HOH |
2.753 6.372 |
NH2 NE |
O8A O |
|||||||||
ARG | D:71 | D:230 | 50.0 | 0.222 | H | -72.2 | -37.6 | 50.0 | 0.222 | 0.0 |
COA HOH |
2.599 6.097 |
NH2 NE |
O8A O |
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ARG | E:71 | E:230 | 44.0 | 0.196 | H | -66.6 | -46.0 | 44.0 | 0.196 | 0.0 |
COA HOH |
2.557 6.290 |
NH2 NE |
O8A O |
|||||||||
ARG | F:71 | F:230 | 48.0 | 0.213 | H | -64.0 | -30.7 | 48.0 | 0.213 | 0.0 |
COA HOH |
2.430 6.286 |
NH2 NE |
O8A O |
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ARG | G:71 | G:230 | 48.0 | 0.213 | H | -71.6 | -38.1 | 48.0 | 0.213 | 0.0 |
COA HOH |
2.311 6.236 |
NH2 NE |
O8A O |
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ARG | H:71 | H:230 | 39.0 | 0.173 | H | -69.7 | -32.1 | 39.0 | 0.173 | 0.0 |
COA HOH |
2.643 6.364 |
NH2 NE |
O8A O |
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2ii5 | 1 | P11181 | 91.51 | 3e-176 |
X-RAY |
2006-12-26 | ARG | A:71 | A:230 | 47.0 | 0.209 | H | -61.1 | -37.7 | 47.0 | 0.209 | 0.0 |
CO6 HOH |
3.004 8.269 |
NH2 N |
O8A O |
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ARG | B:71 | B:230 | 48.0 | 0.213 | H | -52.1 | -46.8 | 48.0 | 0.213 | 0.0 |
CO6 HOH |
2.765 7.096 |
NH2 NE |
O8A O |
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ARG | C:71 | C:230 | 45.0 | 0.2 | H | -59.1 | -43.3 | 45.0 | 0.2 | 0.0 |
CO6 HOH |
2.983 3.093 |
NH2 NH1 |
O9A O |
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ARG | D:71 | D:230 | 42.0 | 0.187 | H | -62.1 | -42.0 | 42.0 | 0.187 | 0.0 |
CO6 HOH |
2.736 3.008 |
NH2 NH1 |
O9A O |
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ARG | E:71 | E:230 | 44.0 | 0.196 | H | -67.8 | -45.7 | 44.0 | 0.196 | 0.0 |
CO6 HOH |
2.794 6.966 |
NH2 NE |
O8A O |
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ARG | F:71 | F:230 | 48.0 | 0.213 | H | -66.7 | -41.3 | 48.0 | 0.213 | 0.0 |
CO6 |
2.660 |
NH2 |
O8A |
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ARG | G:71 | G:230 | 49.0 | 0.218 | H | -65.0 | -37.7 | 49.0 | 0.218 | 0.0 |
CO6 HOH |
2.560 6.748 |
NH2 NE |
O8A O |
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ARG | H:71 | H:230 | 47.0 | 0.209 | H | -63.2 | -29.5 | 47.0 | 0.209 | 0.0 |
CO6 HOH |
2.706 6.896 |
NH2 NE |
O8A O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p11182-f1 | 1 | P11182 | 100.0 | 0.0 | ARG | A:291 | A:291 | 31.0 | 0.138 | H | -64.4 | -40.3 |