Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110211552 . G A CCDS808.1:NM_000848.3:c.118Gat>Aat_NP_000839.1:p.40D>N Homo sapiens glutathione S-transferase mu 2 (GSTM2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2c4j 1 P28161 99.54 3e-164 X-RAY
 2005-10-26 ASP A:40 A:40 117.0 0.78 T -89.0 -22.8 117.0 0.78 0.0 GSO
HOH
 9.690
2.545
 O
OD2
 CL2
O
ASP B:40 B:40 139.0 0.927 T -79.8 -28.1 139.0 0.927 0.0 HOH
 2.815
 O
 O
ASP C:40 C:40 126.0 0.84 T -87.7 -13.7 NA NA NA
ASP D:40 D:40 125.0 0.833 T -79.9 -29.5 NA NA NA
1xw5 1 P28161 100.0 7e-164 X-RAY
 2004-11-30 ASP A:39 A:39 143.0 0.953 T -69.5 -39.9 143.0 0.953 0.0 HOH
 2.912
 N
 O
ASP B:39 B:39 139.0 0.927 T -73.0 -44.2 139.0 0.927 0.0 HOH
 2.762
 OD1
 O
1ykc 1 P28161 100.0 7e-164 X-RAY
 2005-01-25 ASP A:39 A:39 130.0 0.867 T -81.4 -44.0 130.0 0.867 0.0 HOH
 2.797
 OD2
 O
ASP B:39 B:39 119.0 0.793 T -89.1 -21.5 119.0 0.793 0.0 HOH
 3.167
 O
 O
2ab6 1 P28161 100.0 7e-164 X-RAY
 2005-08-02 ASP A:39 A:39 131.0 0.873 T -57.8 -56.1 131.0 0.873 0.0 HOH
 7.871
 N
 O
ASP B:39 B:39 129.0 0.86 T -58.0 -54.2 129.0 0.86 0.0 HOH
 5.228
 O
 O
ASP C:39 C:39 132.0 0.88 T -59.2 -52.6 NA NA NA
ASP D:39 D:39 125.0 0.833 T -56.4 -57.6 NA NA NA
2gtu 1 P28161 100.0 7e-164 X-RAY
 1999-03-02 ASP A:39 A:39 106.0 0.707 S -103.1 102.3 106.0 0.707 0.0 HOH
 8.348
 O
 O
ASP B:39 B:39 103.0 0.687 S -100.2 108.1 103.0 0.687 0.0 HOH
 8.371
 O
 O
3gtu 1 P28161 100.0 7e-164 X-RAY
 1999-07-29 ASP A:39 A:39 128.0 0.853 S -91.0 104.8 128.0 0.853 0.0
ASP C:39 C:39 131.0 0.873 S -90.8 93.6 NA NA NA
3gur 1 P28161 100.0 7e-164 X-RAY
 2009-10-27 ASP A:39 A:39 117.0 0.78 T -118.5 -20.3 117.0 0.78 0.0 BYG
HOH
 9.644
7.233
 O
N
 CE3
O
ASP B:39 B:39 133.0 0.887 T -69.6 -40.4 133.0 0.887 0.0
ASP C:39 C:39 130.0 0.867 T -95.2 -48.5 NA NA NA
ASP D:39 D:39 131.0 0.873 T -132.2 -47.3 NA NA NA
5hwl 1 P28161 100.0 7e-164 X-RAY
 2017-11-08 ASP A:39 A:39 141.0 0.94 T -72.1 -32.4 141.0 0.94 0.0 HOH
 2.871
 N
 O
ASP B:39 B:39 80.0 NA T -86.7 -17.9 80.0 NA NA HOH
 3.770
 C
 O
1hna 1 P28161 99.54 1e-162 X-RAY
 1994-01-31 ASP A:39 A:39 133.0 0.887 S -116.5 73.4 133.0 0.887 0.0 HOH
 8.976
 O
 O
1hnb 1 P28161 99.54 1e-162 X-RAY
 1994-01-31 ASP A:39 A:39 116.0 0.773 S -97.2 127.5 116.0 0.773 0.0
ASP B:39 B:39 103.0 0.687 -68.3 80.3 103.0 0.687 0.0
1hnc 1 P28161 99.54 1e-162 X-RAY
 1994-01-31 ASP A:39 A:39 110.0 0.733 T -95.5 4.3 110.0 0.733 0.0
ASP B:39 B:39 134.0 0.893 S -71.2 86.0 134.0 0.893 0.0
ASP C:39 C:39 148.0 0.987 S -99.8 109.5 NA NA NA
ASP D:39 D:39 102.0 0.68 S -176.0 162.3 NA NA NA
1xw6 1 P09488 84.4 8e-141 X-RAY
 2004-12-21 ASP A:40 A:39 137.0 0.913 T -73.5 -40.8 137.0 0.913 0.0 HOH
 3.233
 O
 O
ASP B:40 B:39 139.0 0.927 T -73.8 -39.6 139.0 0.927 0.0 HOH
 3.166
 O
 O
ASP C:40 C:39 134.0 0.893 T -72.9 -40.5 NA NA NA
ASP D:40 D:39 134.0 0.893 T -73.7 -40.5 NA NA NA
1xwk 1 P09488 84.4 8e-141 X-RAY
 2004-12-21 ASP A:40 A:39 135.0 0.9 T -69.2 -43.8 135.0 0.9 0.0
ASP B:40 B:39 138.0 0.92 T -73.1 -42.3 NA NA NA
ASP C:40 C:39 141.0 0.94 T -74.7 -39.1 141.0 0.94 0.0 HOH
 3.556
 O
 O
1yj6 1 P09488 84.4 8e-141 X-RAY
 2005-02-01 ASP A:40 A:39 137.0 0.913 T -71.2 -43.2 137.0 0.913 0.0 HOH
 3.052
 OD1
 O
ASP B:40 B:39 137.0 0.913 T -74.3 -39.7 137.0 0.913 0.0 HOH
 3.031
 N
 O
ASP C:40 C:39 134.0 0.893 T -72.3 -42.1 NA NA NA
2f3m 1 P09488 84.4 8e-141 X-RAY
 2006-04-25 ASP A:40 A:39 123.0 0.82 S -128.2 18.8 123.0 0.82 0.0 HOH
 7.736
 O
 O
ASP B:40 B:39 130.0 0.867 T -86.1 -35.0 130.0 0.867 0.0
ASP C:40 C:39 125.0 0.833 T -129.9 13.8 NA NA NA
ASP D:40 D:39 131.0 0.873 T -104.1 -19.1 NA NA NA
ASP E:40 E:39 123.0 0.82 S -131.6 15.2 NA NA NA
ASP F:40 F:39 128.0 0.853 T -86.3 -34.2 NA NA NA
7beu 1 P09488 84.4 8e-141 X-RAY
 2022-01-12 ASP A:40 A:39 143.0 0.953 T -87.2 -27.7 143.0 0.953 0.0 HOH
 2.169
 OD2
 O
ASP B:40 B:39 143.0 0.953 T -77.7 -27.0 NA NA NA
ASP C:40 C:39 141.0 0.94 T -83.1 -25.1 NA NA NA
ASP D:40 D:39 140.0 0.933 T -84.7 -37.9 140.0 0.933 0.0 HOH
 3.092
 C
 O
2dc5 1 30354091 83.41 1e-140 X-RAY
 2006-06-28 ASP A:47 A:47 131.0 0.873 T -77.1 -37.7 131.0 0.873 0.0 HOH
 9.877
 O
 O
ASP B:47 B:47 144.0 0.96 T -63.5 -47.6 144.0 0.96 0.0 HOH
 2.992
 CB
 O
1gtu 1 P09488 84.33 6e-140 X-RAY
 1999-02-02 ASP A:39 A:39 127.0 0.847 S -98.8 81.7 127.0 0.847 0.0
ASP B:39 B:39 127.0 0.847 S -90.6 76.4 127.0 0.847 0.0
ASP C:39 C:39 129.0 0.86 S -95.8 79.1 NA NA NA
ASP D:39 D:39 125.0 0.833 S -96.9 76.0 NA NA NA
4gtu 1 Q03013 83.33 7e-139 X-RAY
 2000-01-14 ASP A:39 A:39 141.0 0.94 T -102.4 97.6 141.0 0.94 0.0
ASP B:39 B:39 142.0 0.947 S -106.4 96.0 142.0 0.947 0.0
ASP C:39 C:39 112.0 0.747 S -130.8 88.3 NA NA NA
ASP D:39 D:39 136.0 0.907 S -91.5 78.1 NA NA NA
ASP E:39 E:39 121.0 0.807 S -78.2 60.3 NA NA NA
ASP F:39 F:39 141.0 0.94 T -82.3 -27.8 NA NA NA
ASP G:39 G:39 145.0 0.967 S -119.3 87.9 NA NA NA
ASP H:39 H:39 141.0 0.94 S -90.1 76.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p28161-f1 1 P28161 100.0 3e-165 ASP A:40 A:40 141.0 0.94 T -76.3 -32.6
af-p09488-f1 1 P09488 84.4 3e-141 ASP A:40 A:40 139.0 0.927 T -80.1 -30.9
af-q03013-f1 1 Q03013 83.03 6e-140 ASP A:40 A:40 141.0 0.94 T -79.5 -30.6
af-p46439-f1 1 P46439 81.19 6e-134 ASP A:40 A:40 141.0 0.94 T -79.1 -29.9