Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110230522 . C A CCDS809.1:NM_000561.3:c.27gaC>gaA_NP_000552.2:p.9D>E Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 ASP A:9 A:8 70.0 0.467 S -80.0 51.0 70.0 0.467 0.0 GSH
HOH
 9.512
2.673
 N
O
 CB2
O
ASP B:9 B:8 68.0 0.453 S -78.7 49.0 68.0 0.453 0.0 GSH
HOH
 9.303
2.943
 N
OD2
 CB2
O
ASP C:9 C:8 67.0 0.447 S -79.9 48.4 NA NA NA
ASP D:9 D:8 68.0 0.453 S -80.9 48.8 NA NA NA
1xwk 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 ASP A:9 A:8 75.0 0.5 S -78.1 49.9 75.0 0.5 0.0 GDN
HOH
 9.392
4.143
 N
O
 O2
O
ASP B:9 B:8 75.0 0.5 S -80.6 52.3 NA NA NA
ASP C:9 C:8 77.0 0.513 S -79.9 53.1 77.0 0.513 0.0 GDN
HOH
 9.474
6.676
 N
OD2
 O2
O
1yj6 1 P09488 100.0 3e-164 X-RAY
 2005-02-01 ASP A:9 A:8 70.0 0.467 S -78.5 53.9 70.0 0.467 0.0 GSH
HOH
 9.516
5.329
 N
O
 O2
O
ASP B:9 B:8 71.0 0.473 S -79.6 54.9 71.0 0.473 0.0 GSH
HOH
 9.348
8.108
 N
C
 O2
O
ASP C:9 C:8 70.0 0.467 S -81.8 56.1 NA NA NA
2f3m 1 P09488 100.0 3e-164 X-RAY
 2006-04-25 ASP A:9 A:8 73.0 0.487 S -71.8 48.1 73.0 0.487 0.0 GTD
 9.241
 N
 O21
ASP B:9 B:8 54.0 0.36 S -73.1 48.8 54.0 0.36 0.0 GTD
HOH
 9.299
2.808
 C
OD1
 O21
O
ASP C:9 C:8 49.0 0.327 S -71.4 43.9 NA NA NA
ASP D:9 D:8 49.0 0.327 S -71.5 42.3 NA NA NA
ASP E:9 E:8 71.0 0.473 S -63.9 44.8 NA NA NA
ASP F:9 F:8 48.0 0.32 S -72.1 45.0 NA NA NA
7beu 1 P09488 100.0 3e-164 X-RAY
 2022-01-12 ASP A:9 A:8 71.0 0.473 S -82.3 56.6 71.0 0.473 0.0 HOH
 2.814
 OD1
 O
ASP B:9 B:8 70.0 0.467 S -82.6 55.6 NA NA NA
ASP C:9 C:8 68.0 0.453 S -85.1 59.7 NA NA NA
ASP D:9 D:8 67.0 0.447 S -82.2 56.3 67.0 0.447 0.0 HOH
 2.765
 OD1
 O
1gtu 1 P09488 100.0 2e-163 X-RAY
 1999-02-02 ASP A:8 A:8 58.0 0.387 S -74.4 51.0 58.0 0.387 0.0 HOH
 8.878
 N
 O
ASP B:8 B:8 56.0 0.373 S -78.2 57.3 56.0 0.373 0.0 HOH
 9.094
 C
 O
ASP C:8 C:8 55.0 0.367 S -77.5 57.8 NA NA NA
ASP D:8 D:8 56.0 0.373 S -79.9 58.5 NA NA NA
4gtu 1 Q03013 87.04 3e-144 X-RAY
 2000-01-14 ASP A:8 A:8 32.0 0.213 S -79.4 8.5 32.0 0.213 0.0
ASP B:8 B:8 36.0 0.24 S -87.3 31.0 36.0 0.24 0.0
ASP C:8 C:8 38.0 0.253 S -72.6 21.1 NA NA NA
ASP D:8 D:8 36.0 0.24 S -70.1 -15.4 NA NA NA
ASP E:8 E:8 48.0 0.32 S -82.7 10.0 NA NA NA
ASP F:8 F:8 50.0 0.333 S -82.6 -11.2 NA NA NA
ASP G:8 G:8 30.0 0.2 S -68.0 -14.3 NA NA NA
ASP H:8 H:8 42.0 0.28 S -84.8 18.9 NA NA NA
2c4j 1 P28161 84.86 3e-141 X-RAY
 2005-10-26 ASN A:9 A:9 61.0 0.381 S -82.9 59.0 61.0 0.381 0.0 GSO
HOH
 7.877
2.626
 N
ND2
 CG2
O
ASN B:9 B:9 62.0 0.388 S -80.5 52.3 62.0 0.388 0.0 GSO
HOH
 7.658
2.614
 N
O
 CG2
O
ASN C:9 C:9 63.0 0.394 S -79.1 54.6 NA NA NA
ASN D:9 D:9 68.0 0.425 S -82.8 53.3 NA NA NA
1xw5 1 P28161 84.33 6e-140 X-RAY
 2004-11-30 ASN A:8 A:8 61.0 0.381 S -85.1 53.1 61.0 0.381 0.0 GSH
HOH
 9.092
2.962
 N
OD1
 CB2
O
ASN B:8 B:8 63.0 0.394 S -80.7 58.5 63.0 0.394 0.0 GSH
HOH
 9.015
2.689
 N
OD1
 CB2
O
1ykc 1 P28161 84.33 6e-140 X-RAY
 2005-01-25 ASN A:8 A:8 46.0 0.287 S -78.1 43.1 46.0 0.287 0.0 GDS
HOH
 9.053
2.665
 N
OD1
 SG2
O
ASN B:8 B:8 68.0 0.425 S -75.1 41.0 68.0 0.425 0.0 GDS
HOH
 9.185
2.713
 N
OD1
 SG2
O
2ab6 1 P28161 84.33 6e-140 X-RAY
 2005-08-02 ASN A:8 A:8 67.0 0.419 S -76.6 45.4 67.0 0.419 0.0 GSM
HOH
 9.140
3.451
 N
N
 CB2
O
ASN B:8 B:8 67.0 0.419 S -77.5 46.1 67.0 0.419 0.0 GSM
HOH
 9.137
3.073
 N
ND2
 CB2
O
ASN C:8 C:8 68.0 0.425 S -80.6 47.2 NA NA NA
ASN D:8 D:8 67.0 0.419 S -79.0 49.4 NA NA NA
2gtu 1 P28161 84.33 6e-140 X-RAY
 1999-03-02 ASN A:8 A:8 68.0 0.425 S -75.1 49.6 68.0 0.425 0.0 HOH
 6.381
 N
 O
ASN B:8 B:8 67.0 0.419 S -73.8 42.6 67.0 0.419 0.0 HOH
 5.745
 N
 O
3gtu 1 P28161 84.33 6e-140 X-RAY
 1999-07-29 ASN A:8 A:8 63.0 0.394 S -80.6 63.0 63.0 0.394 0.0 HOH
 9.049
 N
 O
ASN C:8 C:8 64.0 0.4 S -81.1 58.8 NA NA NA
3gur 1 P28161 84.33 6e-140 X-RAY
 2009-10-27 ASN A:8 A:8 66.0 0.412 S -80.2 57.6 66.0 0.412 0.0 BYG
HOH
 8.690
4.369
 N
N
 S1
O
ASN B:8 B:8 71.0 0.444 S -73.4 54.6 71.0 0.444 0.0 GSH
HOH
 9.197
7.300
 N
OD1
 CB2
O
ASN C:8 C:8 70.0 0.438 S -76.2 53.8 NA NA NA
ASN D:8 D:8 67.0 0.419 S -74.7 52.4 NA NA NA
5hwl 1 P28161 84.33 6e-140 X-RAY
 2017-11-08 ASN A:8 A:8 79.0 0.494 S -84.9 57.9 79.0 0.494 0.0 GSH
NNE
HOH
 8.982
9.011
2.703
 N
C
O
 CB2
CBN
O
ASN B:8 B:8 65.0 NA S -78.6 55.2 65.0 NA NA GSH
NNE
HOH
 9.022
9.167
3.663
 N
C
N
 CB2
CAN
O
1hna 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ASN A:8 A:8 44.0 0.275 S -79.7 65.6 44.0 0.275 0.0 GDN
HOH
 9.450
3.351
 N
CB
 O2
O
1hnb 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ASN A:8 A:8 26.0 0.163 S -55.4 -10.5 26.0 0.163 0.0 GDN
 9.717
 N
 O2
ASN B:8 B:8 50.0 0.312 S -54.7 -35.0 50.0 0.312 0.0 GDN
 8.852
 N
 O2
1hnc 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ASN A:8 A:8 62.0 0.388 S -71.8 72.5 62.0 0.388 0.0 GDN
 8.543
 N
 O2
ASN B:8 B:8 63.0 0.394 S -70.5 90.3 63.0 0.394 0.0 GDN
 8.730
 N
 O2
ASN C:8 C:8 64.0 0.4 S -78.6 48.5 NA NA NA
ASN D:8 D:8 59.0 0.369 S -72.6 73.3 NA NA NA
2dc5 1 30354091 81.57 6e-137 X-RAY
 2006-06-28 ASP A:16 A:16 68.0 0.453 S -82.2 50.7 68.0 0.453 0.0 HOH
 2.514
 OD1
 O
ASP B:16 B:16 61.0 0.407 S -83.4 50.3 61.0 0.407 0.0 HOH
 2.520
 OD1
 O
1b4p 1 P08010 80.65 6e-136 X-RAY
 2003-07-08 ASN A:8 A:8 84.0 0.525 S -84.5 57.9 84.0 0.525 0.0 SO4
GPS
GPS
HOH
 7.504
6.689
8.319
2.625
 OD1
N
OD1
O
 O3
CE5
CE4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09488-f1 1 P09488 100.0 1e-164 ASP A:9 A:9 62.0 0.413 S -75.9 55.5
af-q03013-f1 1 Q03013 86.7 3e-145 ASP A:9 A:9 64.0 0.427 S -76.0 56.6
af-p46439-f1 1 P46439 87.61 6e-142 ASP A:9 A:9 60.0 0.4 S -77.0 55.0
af-p28161-f1 1 P28161 84.4 3e-141 ASN A:9 A:9 67.0 0.419 S -74.9 54.5