Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110230800 . C A CCDS809.1:NM_000561.3:c.45caC>caA_NP_000552.2:p.15H>Q Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 HIS A:15 A:14 0.0 0.0 H -55.4 -56.2 0.0 0.0 0.0 HOH
 2.768
 ND1
 O
HIS B:15 B:14 0.0 0.0 H -52.5 -57.7 0.0 0.0 0.0 GSH
HOH
 9.990
2.966
 N
CE1
 SG2
O
HIS C:15 C:14 1.0 0.005 H -51.9 -59.1 NA NA NA
HIS D:15 D:14 0.0 0.0 H -52.4 -57.4 NA NA NA
1xwk 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 HIS A:15 A:14 0.0 0.0 H -54.1 -64.8 0.0 0.0 0.0 GDN
HOH
 9.123
2.831
 N
NE2
 O2B
O
HIS B:15 B:14 0.0 0.0 H -45.9 -60.4 NA NA NA
HIS C:15 C:14 0.0 0.0 H -51.5 -65.7 0.0 0.0 0.0 GDN
HOH
 8.809
2.862
 N
NE2
 O2B
O
1yj6 1 P09488 100.0 3e-164 X-RAY
 2005-02-01 HIS A:15 A:14 1.0 0.005 H -54.7 -67.2 1.0 0.005 0.0 GSH
HOH
 9.618
2.605
 N
ND1
 SG2
O
HIS B:15 B:14 1.0 0.005 H -50.9 -63.3 1.0 0.005 0.0 GSH
HOH
 9.494
2.549
 N
ND1
 SG2
O
HIS C:15 C:14 1.0 0.005 H -47.6 -63.3 NA NA NA
2f3m 1 P09488 100.0 3e-164 X-RAY
 2006-04-25 HIS A:15 A:14 1.0 0.005 H -50.3 -51.4 1.0 0.005 0.0 GTD
HOH
 8.647
2.746
 N
NE2
 O22
O
HIS B:15 B:14 0.0 0.0 H -52.5 -53.2 0.0 0.0 0.0 GTD
HOH
 8.676
2.566
 N
ND1
 O22
O
HIS C:15 C:14 0.0 0.0 H -55.6 -48.7 NA NA NA
HIS D:15 D:14 0.0 0.0 H -56.4 -48.8 NA NA NA
HIS E:15 E:14 0.0 0.0 H -50.6 -51.9 NA NA NA
HIS F:15 F:14 1.0 0.005 H -53.5 -53.2 NA NA NA
7beu 1 P09488 100.0 3e-164 X-RAY
 2022-01-12 HIS A:15 A:14 0.0 0.0 H -60.0 -52.1 0.0 0.0 0.0 HOH
 2.708
 ND1
 O
HIS B:15 B:14 0.0 0.0 H -64.7 -50.1 NA NA NA
HIS C:15 C:14 1.0 0.005 H -60.4 -50.9 NA NA NA
HIS D:15 D:14 0.0 0.0 H -60.8 -50.7 0.0 0.0 0.0 HOH
 2.708
 ND1
 O
1gtu 1 P09488 100.0 2e-163 X-RAY
 1999-02-02 HIS A:14 A:14 0.0 0.0 H -47.5 -55.5 0.0 0.0 0.0 HOH
 3.528
 CE1
 O
HIS B:14 B:14 0.0 0.0 H -47.7 -55.7 0.0 0.0 0.0 HOH
 3.042
 CB
 O
HIS C:14 C:14 0.0 0.0 H -46.2 -57.1 NA NA NA
HIS D:14 D:14 0.0 0.0 H -54.8 -56.2 NA NA NA
4gtu 1 Q03013 87.04 3e-144 X-RAY
 2000-01-14 HIS A:14 A:14 1.0 0.005 H -51.3 -39.8 1.0 0.005 0.0
HIS B:14 B:14 7.0 0.036 H -47.1 -30.0 7.0 0.036 0.0
HIS C:14 C:14 1.0 0.005 T -10.7 -48.7 NA NA NA
HIS D:14 D:14 1.0 0.005 H -57.6 -43.2 NA NA NA
HIS E:14 E:14 1.0 0.005 H -51.1 -34.3 NA NA NA
HIS F:14 F:14 3.0 0.015 H -45.6 -56.1 NA NA NA
HIS G:14 G:14 3.0 0.015 H -50.5 -54.5 NA NA NA
HIS H:14 H:14 4.0 0.021 H -58.0 -39.2 NA NA NA
2c4j 1 P28161 84.86 3e-141 X-RAY
 2005-10-26 HIS A:15 A:15 1.0 0.005 H -56.6 -52.8 1.0 0.005 0.0 GSO
HOH
 9.180
2.720
 N
ND1
 OF2
O
HIS B:15 B:15 1.0 0.005 H -60.2 -51.4 1.0 0.005 0.0 GSO
HOH
 9.141
2.688
 N
ND1
 OF2
O
HIS C:15 C:15 1.0 0.005 H -55.4 -54.5 NA NA NA
HIS D:15 D:15 2.0 0.01 H -60.3 -50.0 NA NA NA
1xw5 1 P28161 84.33 6e-140 X-RAY
 2004-11-30 HIS A:14 A:14 1.0 0.005 H -56.1 -54.6 1.0 0.005 0.0 GSH
HOH
 9.676
2.649
 N
ND1
 SG2
O
HIS B:14 B:14 1.0 0.005 H -53.7 -51.1 1.0 0.005 0.0 GSH
HOH
 9.538
2.617
 N
ND1
 SG2
O
1ykc 1 P28161 84.33 6e-140 X-RAY
 2005-01-25 HIS A:14 A:14 3.0 0.015 H -56.7 -62.5 3.0 0.015 0.0 GDS
HOH
 7.299
2.714
 CB
ND1
 OE3
O
HIS B:14 B:14 1.0 0.005 H -53.3 -58.1 1.0 0.005 0.0 GDS
HOH
 7.210
2.719
 CB
ND1
 OE3
O
2ab6 1 P28161 84.33 6e-140 X-RAY
 2005-08-02 HIS A:14 A:14 0.0 0.0 H -49.8 -55.2 0.0 0.0 0.0 GSM
HOH
 9.876
3.198
 N
ND1
 SG2
O
HIS B:14 B:14 0.0 0.0 H -54.8 -49.0 0.0 0.0 0.0 GSM
HOH
 9.829
3.521
 N
NE2
 SG2
O
HIS C:14 C:14 0.0 0.0 H -54.4 -50.0 NA NA NA
HIS D:14 D:14 1.0 0.005 H -57.6 -49.6 NA NA NA
2gtu 1 P28161 84.33 6e-140 X-RAY
 1999-03-02 HIS A:14 A:14 0.0 0.0 H -48.2 -60.2 0.0 0.0 0.0 HOH
 2.846
 NE2
 O
HIS B:14 B:14 1.0 0.005 H -54.3 -57.3 1.0 0.005 0.0 HOH
 2.715
 ND1
 O
3gtu 1 P28161 84.33 6e-140 X-RAY
 1999-07-29 HIS A:14 A:14 1.0 0.005 H -43.9 -57.7 1.0 0.005 0.0 HOH
 7.921
 N
 O
HIS C:14 C:14 1.0 0.005 H -49.8 -53.3 NA NA NA
3gur 1 P28161 84.33 6e-140 X-RAY
 2009-10-27 HIS A:14 A:14 3.0 0.015 H -59.7 -57.7 3.0 0.015 0.0 BYG
HOH
 7.275
2.816
 N
ND1
 OA3
O
HIS B:14 B:14 1.0 0.005 H -62.5 -59.1 1.0 0.005 0.0 GSH
HOH
 9.668
2.933
 N
ND1
 SG2
O
HIS C:14 C:14 1.0 0.005 H -46.3 -60.1 NA NA NA
HIS D:14 D:14 2.0 0.01 H -55.0 -54.6 NA NA NA
5hwl 1 P28161 84.33 6e-140 X-RAY
 2017-11-08 HIS A:14 A:14 2.0 0.01 H -60.4 -51.1 2.0 0.01 0.0 GSH
NNE
HOH
 9.519
8.651
2.637
 N
N
ND1
 SG2
CBN
O
HIS B:14 B:14 1.0 0.005 H -56.9 -51.2 1.0 0.005 0.0 GSH
NNE
HOH
 9.521
8.598
2.668
 N
N
ND1
 SG2
CAN
O
1hna 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 HIS A:14 A:14 5.0 0.026 H -56.2 -55.6 5.0 0.026 0.0 GDN
HOH
 9.971
2.786
 N
ND1
 SG2
O
1hnb 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 HIS A:14 A:14 34.0 0.174 H -67.0 -65.8 34.0 0.174 0.0 GDN
 9.828
 N
 SG2
HIS B:14 B:14 2.0 0.01 H -69.9 -35.1 2.0 0.01 0.0
1hnc 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 HIS A:14 A:14 3.0 0.015 H -55.1 -48.8 3.0 0.015 0.0 GDN
 9.957
 N
 O12
HIS B:14 B:14 0.0 0.0 H -55.0 -50.1 0.0 0.0 0.0 GDN
 9.502
 N
 O2
HIS C:14 C:14 9.0 0.046 H -59.2 -56.1 NA NA NA
HIS D:14 D:14 0.0 0.0 H -55.4 -48.8 NA NA NA
2dc5 1 30354091 81.57 6e-137 X-RAY
 2006-06-28 HIS A:22 A:22 1.0 0.005 H -57.8 -51.2 1.0 0.005 0.0 HOH
 2.729
 ND1
 O
HIS B:22 B:22 1.0 0.005 H -62.7 -48.3 1.0 0.005 0.0 HOH
 2.748
 ND1
 O
1b4p 1 P08010 80.65 6e-136 X-RAY
 2003-07-08 HIS A:14 A:14 0.0 0.0 H -55.0 -44.3 0.0 0.0 0.0 SO4
GPS
HOH
 7.164
8.764
2.663
 CE1
N
ND1
 O2
CE4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09488-f1 1 P09488 100.0 1e-164 HIS A:15 A:15 0.0 0.0 H -61.0 -52.0
af-q03013-f1 1 Q03013 86.7 3e-145 HIS A:15 A:15 0.0 0.0 H -62.2 -53.1
af-p46439-f1 1 P46439 87.61 6e-142 HIS A:15 A:15 1.0 0.005 H -59.5 -53.6
af-p28161-f1 1 P28161 84.4 3e-141 HIS A:15 A:15 1.0 0.005 H -61.4 -52.9