Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110230802 . C A CCDS809.1:NM_000561.3:c.47gCc>gAc_NP_000552.2:p.16A>D Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 ALA A:16 A:15 4.0 0.035 H -62.1 -32.0 4.0 0.035 0.0 GSH
HOH
 9.994
2.929
 CB
N
 O11
O
ALA B:16 B:15 4.0 0.035 H -63.4 -29.2 4.0 0.035 0.0 HOH
 2.906
 N
 O
ALA C:16 C:15 4.0 0.035 H -60.9 -29.7 NA NA NA
ALA D:16 D:15 5.0 0.043 H -62.7 -29.7 NA NA NA
1xwk 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 ALA A:16 A:15 1.0 0.009 H -51.2 -39.0 1.0 0.009 0.0 HOH
 3.105
 N
 O
ALA B:16 B:15 3.0 0.026 H -55.8 -36.7 NA NA NA
ALA C:16 C:15 2.0 0.017 H -53.3 -34.6 2.0 0.017 0.0 HOH
 3.466
 N
 O
1yj6 1 P09488 100.0 3e-164 X-RAY
 2005-02-01 ALA A:16 A:15 1.0 0.009 H -51.4 -35.5 1.0 0.009 0.0 HOH
 3.608
 N
 O
ALA B:16 B:15 1.0 0.009 H -56.0 -34.2 1.0 0.009 0.0 HOH
 3.269
 N
 O
ALA C:16 C:15 2.0 0.017 H -55.6 -36.7 NA NA NA
2f3m 1 P09488 100.0 3e-164 X-RAY
 2006-04-25 ALA A:16 A:15 3.0 0.026 H -61.0 -40.1 3.0 0.026 0.0 HOH
 4.995
 CB
 O
ALA B:16 B:15 2.0 0.017 H -59.5 -41.7 2.0 0.017 0.0 GTD
HOH
 9.929
6.401
 CB
N
 O12
O
ALA C:16 C:15 3.0 0.026 H -64.6 -37.1 NA NA NA
ALA D:16 D:15 4.0 0.035 H -64.5 -36.4 NA NA NA
ALA E:16 E:15 3.0 0.026 H -60.7 -40.6 NA NA NA
ALA F:16 F:15 4.0 0.035 H -61.5 -39.9 NA NA NA
7beu 1 P09488 100.0 3e-164 X-RAY
 2022-01-12 ALA A:16 A:15 4.0 0.035 H -62.1 -34.0 4.0 0.035 0.0 HOH
 2.967
 N
 O
ALA B:16 B:15 3.0 0.026 H -63.7 -33.9 NA NA NA
ALA C:16 C:15 3.0 0.026 H -62.4 -36.3 NA NA NA
ALA D:16 D:15 3.0 0.026 H -65.2 -33.3 3.0 0.026 0.0 HOH
 3.022
 N
 O
1gtu 1 P09488 100.0 2e-163 X-RAY
 1999-02-02 ALA A:15 A:15 3.0 0.026 H -61.1 -34.3 3.0 0.026 0.0 HOH
 3.823
 CB
 O
ALA B:15 B:15 2.0 0.017 H -59.1 -34.2 2.0 0.017 0.0 HOH
 3.265
 N
 O
ALA C:15 C:15 2.0 0.017 H -59.9 -38.7 NA NA NA
ALA D:15 D:15 4.0 0.035 H -56.7 -36.2 NA NA NA
4gtu 1 Q03013 87.04 3e-144 X-RAY
 2000-01-14 ALA A:15 A:15 3.0 0.026 H -72.0 -36.4 3.0 0.026 0.0
ALA B:15 B:15 4.0 0.035 H -72.3 -49.4 4.0 0.035 0.0
ALA C:15 C:15 4.0 0.035 H -59.8 -56.6 NA NA NA
ALA D:15 D:15 2.0 0.017 H -63.3 -47.8 NA NA NA
ALA E:15 E:15 1.0 0.009 H -73.1 -25.7 NA NA NA
ALA F:15 F:15 6.0 0.052 H -50.7 -50.4 NA NA NA
ALA G:15 G:15 5.0 0.043 H -57.9 -39.9 NA NA NA
ALA H:15 H:15 3.0 0.026 H -65.7 -35.0 NA NA NA
2c4j 1 P28161 84.86 3e-141 X-RAY
 2005-10-26 SER A:16 A:16 2.0 0.017 H -64.0 -35.7 2.0 0.017 0.0 HOH
 2.912
 N
 O
SER B:16 B:16 2.0 0.017 H -62.4 -37.8 2.0 0.017 0.0 HOH
 2.887
 N
 O
SER C:16 C:16 2.0 0.017 H -60.9 -36.0 NA NA NA
SER D:16 D:16 1.0 0.009 H -62.1 -37.9 NA NA NA
1xw5 1 P28161 84.33 6e-140 X-RAY
 2004-11-30 SER A:15 A:15 1.0 0.009 H -59.2 -39.5 1.0 0.009 0.0 HOH
 2.905
 OG
 O
SER B:15 B:15 2.0 0.017 H -65.1 -36.2 2.0 0.017 0.0 HOH
 2.767
 N
 O
1ykc 1 P28161 84.33 6e-140 X-RAY
 2005-01-25 SER A:15 A:15 1.0 0.009 H -51.8 -36.2 1.0 0.009 0.0 GDS
HOH
 8.081
2.834
 OG
N
 OE3
O
SER B:15 B:15 1.0 0.009 H -59.6 -33.2 1.0 0.009 0.0 GDS
HOH
 8.123
2.991
 OG
N
 OE3
O
2ab6 1 P28161 84.33 6e-140 X-RAY
 2005-08-02 SER A:15 A:15 0.0 0.0 H -62.8 -39.1 0.0 0.0 0.0 GSM
HOH
 9.979
2.958
 CB
N
 O12
O
SER B:15 B:15 2.0 0.017 H -69.4 -38.4 2.0 0.017 0.0 HOH
 7.431
 N
 O
SER C:15 C:15 0.0 0.0 H -66.3 -40.1 NA NA NA
SER D:15 D:15 1.0 0.009 H -63.7 -42.0 NA NA NA
2gtu 1 P28161 84.33 6e-140 X-RAY
 1999-03-02 SER A:15 A:15 1.0 0.009 H -66.1 -20.6 1.0 0.009 0.0 HOH
 2.883
 N
 O
SER B:15 B:15 2.0 0.017 H -63.4 -31.2 2.0 0.017 0.0 HOH
 4.434
 OG
 O
3gtu 1 P28161 84.33 6e-140 X-RAY
 1999-07-29 SER A:15 A:15 2.0 0.017 H -60.0 -37.0 2.0 0.017 0.0 HOH
 5.969
 CB
 O
SER C:15 C:15 2.0 0.017 H -63.0 -30.0 NA NA NA
3gur 1 P28161 84.33 6e-140 X-RAY
 2009-10-27 SER A:15 A:15 1.0 0.009 H -56.7 -36.5 1.0 0.009 0.0 BYG
HOH
 8.671
2.826
 N
N
 OA3
O
SER B:15 B:15 1.0 0.009 H -61.7 -37.5 1.0 0.009 0.0 GSH
HOH
 9.321
2.838
 OG
OG
 O11
O
SER C:15 C:15 1.0 0.009 H -58.3 -32.9 NA NA NA
SER D:15 D:15 1.0 0.009 H -58.6 -37.7 NA NA NA
5hwl 1 P28161 84.33 6e-140 X-RAY
 2017-11-08 SER A:15 A:15 2.0 0.017 H -62.8 -35.5 2.0 0.017 0.0 HOH
 2.804
 N
 O
SER B:15 B:15 2.0 0.017 H -63.2 -37.7 2.0 0.017 0.0 HOH
 2.894
 N
 O
1hna 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 SER A:15 A:15 2.0 0.017 H -60.1 -33.7 2.0 0.017 0.0 HOH
 2.896
 N
 O
1hnb 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 SER A:15 A:15 0.0 0.0 H -54.7 -37.1 0.0 0.0 0.0 GDN
 9.200
 OG
 O12
SER B:15 B:15 1.0 0.009 H -67.0 -40.4 1.0 0.009 0.0
1hnc 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 SER A:15 A:15 0.0 0.0 H -64.8 -30.3 0.0 0.0 0.0 GDN
 8.955
 OG
 O12
SER B:15 B:15 0.0 0.0 H -61.7 -29.5 0.0 0.0 0.0 GDN
 9.091
 OG
 O11
SER C:15 C:15 0.0 0.0 H -68.8 -22.4 NA NA NA
SER D:15 D:15 0.0 0.0 H -62.9 -42.3 NA NA NA
2dc5 1 30354091 81.57 6e-137 X-RAY
 2006-06-28 ALA A:23 A:23 3.0 0.026 H -61.6 -37.0 3.0 0.026 0.0 HOH
 2.778
 N
 O
ALA B:23 B:23 4.0 0.035 H -62.4 -38.8 4.0 0.035 0.0 HOH
 3.058
 N
 O
1b4p 1 P08010 80.65 6e-136 X-RAY
 2003-07-08 PRO A:15 A:15 1.0 0.007 H -61.0 -35.0 1.0 0.007 0.0 GPS
HOH
 9.518
3.228
 CD
CG
 CE4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09488-f1 1 P09488 100.0 1e-164 ALA A:16 A:16 2.0 0.017 H -59.2 -36.4
af-q03013-f1 1 Q03013 86.7 3e-145 ALA A:16 A:16 2.0 0.017 H -58.0 -35.9
af-p46439-f1 1 P46439 87.61 6e-142 ALA A:16 A:16 2.0 0.017 H -59.3 -35.8
af-p28161-f1 1 P28161 84.4 3e-141 SER A:16 A:16 4.0 0.035 H -59.0 -35.0