Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 110231747 | . | C | A | CCDS809.1:NM_000561.3:c.255aaC>aaA_NP_000552.2:p.85N>K | Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1xw6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ASN | A:85 | A:84 | 133.0 | 0.831 | T | 45.9 | 50.7 | 133.0 | 0.831 | 0.0 |
HOH |
2.927 |
O |
O |
||
ASN | B:85 | B:84 | 86.0 | 0.537 | T | 44.9 | 51.0 | 86.0 | 0.537 | 0.0 |
HOH |
3.999 |
OD1 |
O |
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ASN | C:85 | C:84 | 83.0 | 0.519 | T | 46.4 | 51.3 | NA | NA | NA | |||||||||||||
ASN | D:85 | D:84 | 98.0 | 0.613 | T | 48.4 | 49.7 | NA | NA | NA | |||||||||||||
1xwk | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ASN | A:85 | A:84 | 118.0 | 0.738 | T | 49.3 | 50.4 | 118.0 | 0.738 | 0.0 |
HOH |
3.274 |
OD1 |
O |
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ASN | B:85 | B:84 | 119.0 | 0.744 | T | 52.5 | 52.1 | NA | NA | NA | |||||||||||||
ASN | C:85 | C:84 | 111.0 | 0.694 | T | 55.3 | 47.4 | 111.0 | 0.694 | 0.0 |
HOH |
3.336 |
OD1 |
O |
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1yj6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2005-02-01 | ASN | A:85 | A:84 | 107.0 | 0.669 | T | 48.2 | 53.8 | 107.0 | 0.669 | 0.0 |
HOH |
3.386 |
CA |
O |
||
ASN | B:85 | B:84 | 120.0 | 0.75 | T | 48.9 | 52.2 | 120.0 | 0.75 | 0.0 | |||||||||||||
ASN | C:85 | C:84 | 119.0 | 0.744 | T | 49.8 | 53.3 | NA | NA | NA | |||||||||||||
2f3m | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2006-04-25 | ASN | A:85 | A:84 | 115.0 | 0.719 | T | 52.4 | 58.9 | 115.0 | 0.719 | 0.0 |
HOH |
2.793 |
O |
O |
||
ASN | B:85 | B:84 | 115.0 | 0.719 | T | 52.4 | 57.0 | 115.0 | 0.719 | 0.0 |
HOH |
8.831 |
O |
O |
|||||||||
ASN | C:85 | C:84 | 113.0 | 0.706 | T | 51.4 | 60.0 | NA | NA | NA | |||||||||||||
ASN | D:85 | D:84 | 113.0 | 0.706 | T | 54.0 | 56.1 | NA | NA | NA | |||||||||||||
ASN | E:85 | E:84 | 114.0 | 0.713 | T | 52.8 | 56.4 | NA | NA | NA | |||||||||||||
ASN | F:85 | F:84 | 114.0 | 0.713 | T | 53.0 | 55.9 | NA | NA | NA | |||||||||||||
7beu | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2022-01-12 | ASN | A:85 | A:84 | 123.0 | 0.769 | T | 52.2 | 50.5 | 123.0 | 0.769 | 0.0 |
NA HOH |
8.746 2.862 |
C O |
NA O |
||
ASN | B:85 | B:84 | 107.0 | 0.669 | T | 53.0 | 54.3 | NA | NA | NA | |||||||||||||
ASN | C:85 | C:84 | 126.0 | 0.787 | T | 53.8 | 48.8 | NA | NA | NA | |||||||||||||
ASN | D:85 | D:84 | 94.0 | 0.588 | T | 50.3 | 54.5 | 94.0 | 0.588 | 0.0 |
HOH |
2.380 |
ND2 |
O |
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1gtu | 1 | P09488 | 100.0 | 2e-163 |
X-RAY |
1999-02-02 | ASN | A:84 | A:84 | 104.0 | 0.65 | T | 63.3 | 33.0 | 104.0 | 0.65 | 0.0 | ||||||
ASN | B:84 | B:84 | 101.0 | 0.631 | T | 60.1 | 36.7 | 101.0 | 0.631 | 0.0 | |||||||||||||
ASN | C:84 | C:84 | 101.0 | 0.631 | T | 56.7 | 41.6 | NA | NA | NA | |||||||||||||
ASN | D:84 | D:84 | 99.0 | 0.619 | T | 64.5 | 39.4 | NA | NA | NA | |||||||||||||
4gtu | 1 | Q03013 | 87.04 | 3e-144 |
X-RAY |
2000-01-14 | ASN | A:84 | A:84 | 107.0 | 0.669 | T | 41.1 | 44.0 | 107.0 | 0.669 | 0.0 | ||||||
ASN | B:84 | B:84 | 119.0 | 0.744 | T | 69.0 | 20.5 | 119.0 | 0.744 | 0.0 | |||||||||||||
ASN | C:84 | C:84 | 103.0 | 0.644 | T | 46.2 | 31.1 | NA | NA | NA | |||||||||||||
ASN | D:84 | D:84 | 126.0 | 0.787 | T | 46.2 | 35.4 | NA | NA | NA | |||||||||||||
ASN | E:84 | E:84 | 96.0 | 0.6 | T | 60.7 | 10.3 | NA | NA | NA | |||||||||||||
ASN | F:84 | F:84 | 111.0 | 0.694 | T | 56.7 | 17.4 | NA | NA | NA | |||||||||||||
ASN | G:84 | G:84 | 99.0 | 0.619 | T | 47.5 | 37.7 | NA | NA | NA | |||||||||||||
ASN | H:84 | H:84 | 115.0 | 0.719 | T | 50.0 | 23.9 | NA | NA | NA | |||||||||||||
2c4j | 1 | P28161 | 84.86 | 3e-141 |
X-RAY |
2005-10-26 | ASN | A:85 | A:85 | 109.0 | 0.681 | T | 56.5 | 42.7 | 109.0 | 0.681 | 0.0 |
HOH |
2.614 |
OD1 |
O |
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ASN | B:85 | B:85 | 127.0 | 0.794 | T | 56.2 | 44.9 | 127.0 | 0.794 | 0.0 |
HOH |
2.982 |
O |
O |
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ASN | C:85 | C:85 | 107.0 | 0.669 | T | 54.0 | 47.0 | NA | NA | NA | |||||||||||||
ASN | D:85 | D:85 | 126.0 | 0.787 | T | 51.9 | 48.0 | NA | NA | NA | |||||||||||||
1xw5 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2004-11-30 | ASN | A:84 | A:84 | 102.0 | 0.637 | T | 56.3 | 47.0 | 102.0 | 0.637 | 0.0 |
HOH |
2.611 |
ND2 |
O |
||
ASN | B:84 | B:84 | 102.0 | 0.637 | T | 54.3 | 42.9 | 102.0 | 0.637 | 0.0 |
HOH |
2.731 |
ND2 |
O |
|||||||||
1ykc | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-01-25 | ASN | A:84 | A:84 | 100.0 | 0.625 | T | 52.4 | 46.5 | 100.0 | 0.625 | 0.0 |
HOH |
3.391 |
ND2 |
O |
||
ASN | B:84 | B:84 | 106.0 | 0.662 | T | 49.7 | 38.3 | 106.0 | 0.662 | 0.0 |
HOH |
2.643 |
ND2 |
O |
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2ab6 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-08-02 | ASN | A:84 | A:84 | 102.0 | 0.637 | T | 49.5 | 57.3 | 102.0 | 0.637 | 0.0 |
HOH |
8.950 |
C |
O |
||
ASN | B:84 | B:84 | 102.0 | 0.637 | T | 47.0 | 58.6 | 102.0 | 0.637 | 0.0 |
HOH |
8.344 |
N |
O |
|||||||||
ASN | C:84 | C:84 | 104.0 | 0.65 | T | 46.6 | 55.1 | NA | NA | NA | |||||||||||||
ASN | D:84 | D:84 | 101.0 | 0.631 | T | 49.2 | 53.8 | NA | NA | NA | |||||||||||||
2gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-03-02 | ASN | A:84 | A:84 | 127.0 | 0.794 | T | 58.9 | 39.3 | 127.0 | 0.794 | 0.0 |
HOH |
8.302 |
O |
O |
||
ASN | B:84 | B:84 | 132.0 | 0.825 | T | 62.6 | 38.5 | 132.0 | 0.825 | 0.0 |
HOH |
8.407 |
O |
O |
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3gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-07-29 | ASN | A:84 | A:84 | 112.0 | 0.7 | T | 60.8 | 23.1 | 112.0 | 0.7 | 0.0 | ||||||
ASN | C:84 | C:84 | 113.0 | 0.706 | T | 61.0 | 26.8 | NA | NA | NA | |||||||||||||
3gur | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2009-10-27 | ASN | A:84 | A:84 | 151.0 | 0.944 | T | 49.4 | 46.8 | 151.0 | 0.944 | 0.0 |
HOH |
3.370 |
C |
O |
||
ASN | B:84 | B:84 | 111.0 | 0.694 | T | 53.3 | 46.1 | 111.0 | 0.694 | 0.0 |
HOH |
3.158 |
C |
O |
|||||||||
ASN | C:84 | C:84 | 102.0 | 0.637 | T | 66.8 | 31.5 | NA | NA | NA | |||||||||||||
ASN | D:84 | D:84 | 108.0 | 0.675 | T | 53.1 | 43.7 | NA | NA | NA | |||||||||||||
5hwl | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2017-11-08 | ASN | A:84 | A:84 | 142.0 | 0.887 | T | 55.9 | 43.1 | 142.0 | 0.887 | 0.0 |
HOH |
4.016 |
O |
O |
||
ASN | B:84 | B:84 | 89.0 | 0.556 | T | 48.1 | 46.9 | 89.0 | 0.556 | 0.0 |
HOH |
4.432 |
O |
O |
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1hna | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ASN | A:84 | A:84 | 140.0 | 0.875 | T | 56.9 | 37.8 | 140.0 | 0.875 | 0.0 |
HOH |
3.207 |
O |
O |
||
1hnb | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ASN | A:84 | A:84 | 99.0 | 0.619 | T | 44.5 | 43.6 | 99.0 | 0.619 | 0.0 | ||||||
ASN | B:84 | B:84 | 108.0 | 0.675 | T | 62.9 | 21.1 | 108.0 | 0.675 | 0.0 | |||||||||||||
1hnc | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ASN | A:84 | A:84 | 130.0 | 0.812 | T | 59.2 | 19.9 | 130.0 | 0.812 | 0.0 | ||||||
ASN | B:84 | B:84 | 111.0 | 0.694 | T | 60.4 | 32.5 | 111.0 | 0.694 | 0.0 | |||||||||||||
ASN | C:84 | C:84 | 111.0 | 0.694 | T | 61.8 | 17.7 | NA | NA | NA | |||||||||||||
ASN | D:84 | D:84 | 102.0 | 0.637 | T | 29.5 | 68.3 | NA | NA | NA | |||||||||||||
2dc5 | 1 | 30354091 | 81.57 | 6e-137 |
X-RAY |
2006-06-28 | ASN | A:92 | A:92 | 88.0 | 0.55 | T | 55.4 | 47.6 | 88.0 | 0.55 | 0.0 |
HOH |
2.810 |
O |
O |
||
ASN | B:92 | B:92 | 86.0 | 0.537 | T | 55.1 | 50.3 | 86.0 | 0.537 | 0.0 |
HOH |
2.724 |
O |
O |
|||||||||
1b4p | 1 | P08010 | 80.65 | 6e-136 |
X-RAY |
2003-07-08 | HIS | A:84 | A:84 | 149.0 | 0.764 | T | 57.9 | 46.1 | 149.0 | 0.764 | 0.0 |
HOH |
2.985 |
CD2 |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p09488-f1 | 1 | P09488 | 100.0 | 1e-164 | ASN | A:85 | A:85 | 137.0 | 0.856 | T | 55.7 | 43.3 | |
af-q03013-f1 | 1 | Q03013 | 86.7 | 3e-145 | ASN | A:85 | A:85 | 136.0 | 0.85 | T | 56.1 | 42.8 | |
af-p46439-f1 | 1 | P46439 | 87.61 | 6e-142 | ASN | A:85 | A:85 | 134.0 | 0.838 | T | 56.0 | 41.7 | |
af-p28161-f1 | 1 | P28161 | 84.4 | 3e-141 | ASN | A:85 | A:85 | 121.0 | 0.756 | T | 52.7 | 42.7 |