Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 110231874 | . | G | A | CCDS809.1:NM_000561.3:c.287cGt>cAt_NP_000552.2:p.96R>H | Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1xw6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:96 | A:95 | 13.0 | 0.058 | H | -62.5 | -41.4 | 10.0 | 0.044 | 0.014 |
B:P09488:0.013 |
HOH |
2.757 |
NH1 |
O |
|
ARG | B:96 | B:95 | 14.0 | 0.062 | H | -62.7 | -40.5 | 10.0 | 0.044 | 0.018 |
A:P09488:0.018 |
HOH |
3.201 |
NH1 |
O |
||||||||
ARG | C:96 | C:95 | 14.0 | 0.062 | H | -63.1 | -42.5 | NA | NA | NA | |||||||||||||
ARG | D:96 | D:95 | 14.0 | 0.062 | H | -64.1 | -40.6 | NA | NA | NA | |||||||||||||
1xwk | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2004-12-21 | ARG | A:96 | A:95 | 16.0 | 0.071 | H | -55.4 | -43.3 | 13.0 | 0.058 | 0.013 |
C:P09488:0.013 |
HOH |
7.085 |
CD |
O |
|
ARG | B:96 | B:95 | 16.0 | 0.071 | H | -61.5 | -41.4 | NA | NA | NA | |||||||||||||
ARG | C:96 | C:95 | 16.0 | 0.071 | H | -52.4 | -39.9 | 14.0 | 0.062 | 0.009 |
A:P09488:0.009 |
HOH |
3.616 |
NH1 |
O |
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1yj6 | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2005-02-01 | ARG | A:96 | A:95 | 16.0 | 0.071 | H | -60.7 | -40.0 | 13.0 | 0.058 | 0.013 |
B:P09488:0.013 |
HOH |
3.256 |
NH1 |
O |
|
ARG | B:96 | B:95 | 14.0 | 0.062 | H | -55.4 | -41.4 | 14.0 | 0.062 | 0.0 |
HOH |
4.189 |
CG |
O |
|||||||||
ARG | C:96 | C:95 | 14.0 | 0.062 | H | -60.0 | -41.3 | NA | NA | NA | |||||||||||||
2f3m | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2006-04-25 | ARG | A:96 | A:95 | 21.0 | 0.093 | H | -54.6 | -47.3 | 17.0 | 0.076 | 0.017 |
B:P09488:0.018 |
HOH |
7.736 |
C |
O |
|
ARG | B:96 | B:95 | 20.0 | 0.089 | H | -53.2 | -47.5 | 16.0 | 0.071 | 0.018 |
A:P09488:0.018 |
HOH |
7.214 |
NE |
O |
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ARG | C:96 | C:95 | 20.0 | 0.089 | H | -57.9 | -45.8 | NA | NA | NA | |||||||||||||
ARG | D:96 | D:95 | 19.0 | 0.084 | H | -56.9 | -44.8 | NA | NA | NA | |||||||||||||
ARG | E:96 | E:95 | 21.0 | 0.093 | H | -56.0 | -46.3 | NA | NA | NA | |||||||||||||
ARG | F:96 | F:95 | 21.0 | 0.093 | H | -55.3 | -45.7 | NA | NA | NA | |||||||||||||
7beu | 1 | P09488 | 100.0 | 3e-164 |
X-RAY |
2022-01-12 | ARG | A:96 | A:95 | 37.0 | 0.164 | H | -61.9 | -40.7 | 32.0 | 0.142 | 0.022 |
D:P09488:0.022 |
HOH |
2.697 |
NH1 |
O |
|
ARG | B:96 | B:95 | 23.0 | 0.102 | H | -59.0 | -40.5 | NA | NA | NA | |||||||||||||
ARG | C:96 | C:95 | 37.0 | 0.164 | H | -60.3 | -42.7 | NA | NA | NA | |||||||||||||
ARG | D:96 | D:95 | 14.0 | 0.062 | H | -62.8 | -37.5 | 8.0 | 0.036 | 0.026 |
A:P09488:0.027 |
HOH |
2.775 |
NH1 |
O |
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1gtu | 1 | P09488 | 100.0 | 2e-163 |
X-RAY |
1999-02-02 | ARG | A:95 | A:95 | 32.0 | 0.142 | H | -65.2 | -37.0 | 27.0 | 0.12 | 0.022 |
B:P09488:0.022 |
HOH |
5.562 |
N |
O |
|
ARG | B:95 | B:95 | 26.0 | 0.116 | H | -59.0 | -36.7 | 22.0 | 0.098 | 0.018 |
A:P09488:0.018 |
HOH |
5.947 |
N |
O |
||||||||
ARG | C:95 | C:95 | 30.0 | 0.133 | H | -65.2 | -38.4 | NA | NA | NA | |||||||||||||
ARG | D:95 | D:95 | 29.0 | 0.129 | H | -60.2 | -37.7 | NA | NA | NA | |||||||||||||
4gtu | 1 | Q03013 | 87.04 | 3e-144 |
X-RAY |
2000-01-14 | ARG | A:95 | A:95 | 45.0 | 0.2 | H | -63.9 | -40.0 | 35.0 | 0.156 | 0.044 |
B:Q03013:0.044 |
|||||
ARG | B:95 | B:95 | 55.0 | 0.244 | H | -69.3 | -26.7 | 38.0 | 0.169 | 0.075 |
A:Q03013:0.076 |
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ARG | C:95 | C:95 | 34.0 | 0.151 | H | -83.6 | -35.1 | NA | NA | NA | |||||||||||||
ARG | D:95 | D:95 | 39.0 | 0.173 | H | -63.5 | -38.2 | NA | NA | NA | |||||||||||||
ARG | E:95 | E:95 | 48.0 | 0.213 | H | -66.8 | -25.7 | NA | NA | NA | |||||||||||||
ARG | F:95 | F:95 | 51.0 | 0.227 | H | -54.6 | -43.1 | NA | NA | NA | |||||||||||||
ARG | G:95 | G:95 | 34.0 | 0.151 | H | -78.7 | -29.4 | NA | NA | NA | |||||||||||||
ARG | H:95 | H:95 | 47.0 | 0.209 | H | -69.0 | -19.8 | NA | NA | NA | |||||||||||||
2c4j | 1 | P28161 | 84.86 | 3e-141 |
X-RAY |
2005-10-26 | ARG | A:96 | A:96 | 43.0 | 0.191 | H | -58.3 | -43.7 | 43.0 | 0.191 | 0.0 |
HOH |
2.783 |
NH1 |
O |
||
ARG | B:96 | B:96 | 51.0 | 0.227 | H | -61.0 | -41.2 | 51.0 | 0.227 | 0.0 |
HOH |
2.716 |
NH1 |
O |
|||||||||
ARG | C:96 | C:96 | 100.0 | 0.444 | H | -62.7 | -39.1 | NA | NA | NA | |||||||||||||
ARG | D:96 | D:96 | 72.0 | 0.32 | H | -62.2 | -39.6 | NA | NA | NA | |||||||||||||
1xw5 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2004-11-30 | ARG | A:95 | A:95 | 51.0 | 0.227 | H | -62.5 | -39.8 | 51.0 | 0.227 | 0.0 |
HOH |
2.826 |
NH1 |
O |
||
ARG | B:95 | B:95 | 50.0 | 0.222 | H | -58.2 | -42.8 | 50.0 | 0.222 | 0.0 |
HOH |
2.772 |
NH1 |
O |
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1ykc | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-01-25 | ARG | A:95 | A:95 | 54.0 | 0.24 | H | -59.1 | -38.4 | 53.0 | 0.236 | 0.004 |
B:P28161:0.004 |
HOH |
2.687 |
NH1 |
O |
|
ARG | B:95 | B:95 | 50.0 | 0.222 | H | -64.2 | -36.7 | 47.0 | 0.209 | 0.013 |
A:P28161:0.013 |
HOH |
2.941 |
CD |
O |
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2ab6 | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2005-08-02 | ARG | A:95 | A:95 | 59.0 | 0.262 | H | -62.0 | -40.2 | 59.0 | 0.262 | 0.0 |
HOH |
5.452 |
N |
O |
||
ARG | B:95 | B:95 | 60.0 | 0.267 | H | -65.5 | -37.9 | 59.0 | 0.262 | 0.005 |
A:P28161:0.004 |
HOH |
6.038 |
NH2 |
O |
||||||||
ARG | C:95 | C:95 | 61.0 | 0.271 | H | -66.9 | -38.2 | NA | NA | NA | |||||||||||||
ARG | D:95 | D:95 | 59.0 | 0.262 | H | -66.6 | -36.4 | NA | NA | NA | |||||||||||||
2gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-03-02 | ARG | A:95 | A:95 | 41.0 | 0.182 | H | -57.2 | -30.7 | 41.0 | 0.182 | 0.0 |
HOH |
6.914 |
C |
O |
||
ARG | B:95 | B:95 | 50.0 | 0.222 | H | -54.6 | -39.8 | 50.0 | 0.222 | 0.0 |
HOH |
6.768 |
C |
O |
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3gtu | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
1999-07-29 | ARG | A:95 | A:95 | 66.0 | 0.293 | H | -60.4 | -45.3 | 64.0 | 0.284 | 0.009 |
B:P21266:0.009 |
HOH |
5.737 |
N |
O |
|
ARG | C:95 | C:95 | 65.0 | 0.289 | H | -59.3 | -48.7 | NA | NA | NA | |||||||||||||
3gur | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2009-10-27 | ARG | A:95 | A:95 | 41.0 | 0.182 | H | -62.0 | -41.2 | 36.0 | 0.16 | 0.022 |
B:P28161:0.022 |
HOH |
3.191 |
NH1 |
O |
|
ARG | B:95 | B:95 | 53.0 | 0.236 | H | -63.0 | -41.2 | 42.0 | 0.187 | 0.049 |
A:P28161:0.049 |
HOH |
2.783 |
NH2 |
O |
||||||||
ARG | C:95 | C:95 | 50.0 | 0.222 | H | -53.9 | -44.2 | NA | NA | NA | |||||||||||||
ARG | D:95 | D:95 | 71.0 | 0.316 | H | -62.3 | -41.1 | NA | NA | NA | |||||||||||||
5hwl | 1 | P28161 | 84.33 | 6e-140 |
X-RAY |
2017-11-08 | ARG | A:95 | A:95 | 29.0 | NA | H | -64.6 | -39.6 | 28.0 | NA | NA |
B:P28161:NA |
HOH |
5.669 |
N |
O |
|
ARG | B:95 | B:95 | 86.0 | 0.382 | H | -63.9 | -38.2 | 81.0 | 0.36 | 0.022 |
A:P28161:0.022 |
HOH |
3.594 |
CD |
O |
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1hna | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ARG | A:95 | A:95 | 65.0 | 0.289 | H | -63.6 | -46.5 | 64.0 | 0.284 | 0.005 |
A:P28161:0.004 |
HOH |
3.445 |
CG |
O |
|
1hnb | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ARG | A:95 | A:95 | 58.0 | 0.258 | H | -62.4 | -45.7 | 58.0 | 0.258 | 0.0 | ||||||
ARG | B:95 | B:95 | 46.0 | 0.204 | H | -61.1 | -54.2 | 46.0 | 0.204 | 0.0 | |||||||||||||
1hnc | 1 | P28161 | 83.87 | 1e-138 |
X-RAY |
1994-01-31 | ARG | A:95 | A:95 | 74.0 | 0.329 | H | -54.9 | -46.5 | 71.0 | 0.316 | 0.013 |
B:P28161:0.013 |
|||||
ARG | B:95 | B:95 | 41.0 | 0.182 | H | -58.7 | -53.6 | 41.0 | 0.182 | 0.0 | |||||||||||||
ARG | C:95 | C:95 | 46.0 | 0.204 | H | -60.4 | -43.9 | NA | NA | NA | |||||||||||||
ARG | D:95 | D:95 | 60.0 | 0.267 | H | -60.0 | -36.9 | NA | NA | NA | |||||||||||||
2dc5 | 1 | 30354091 | 81.57 | 6e-137 |
X-RAY |
2006-06-28 | ARG | A:103 | A:103 | 38.0 | 0.169 | H | -60.8 | -41.8 | 26.0 | 0.116 | 0.053 |
B:30354091:0.053 |
HOH |
2.942 |
NH1 |
O |
|
ARG | B:103 | B:103 | 38.0 | 0.169 | H | -61.4 | -43.8 | 27.0 | 0.12 | 0.049 |
A:30354091:0.049 |
HOH |
2.888 |
NH1 |
O |
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1b4p | 1 | P08010 | 80.65 | 6e-136 |
X-RAY |
2003-07-08 | ARG | A:95 | A:95 | 31.0 | 0.138 | H | -56.8 | -44.5 | 28.0 | 0.124 | 0.014 |
A:P08010:0.013 |
HOH |
2.960 |
NH1 |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p09488-f1 | 1 | P09488 | 100.0 | 1e-164 | ARG | A:96 | A:96 | 32.0 | 0.142 | H | -67.1 | -40.2 | |
af-q03013-f1 | 1 | Q03013 | 86.7 | 3e-145 | ARG | A:96 | A:96 | 38.0 | 0.169 | H | -68.0 | -39.2 | |
af-p46439-f1 | 1 | P46439 | 87.61 | 6e-142 | ARG | A:96 | A:96 | 18.0 | 0.08 | H | -65.6 | -41.2 | |
af-p28161-f1 | 1 | P28161 | 84.4 | 3e-141 | ARG | A:96 | A:96 | 46.0 | 0.204 | H | -63.5 | -41.9 |