Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 110231922 . G A CCDS809.1:NM_000561.3:c.335gGc>gAc_NP_000552.2:p.112G>D Homo sapiens glutathione S-transferase mu 1 (GSTM1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1xw6 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 GLY A:112 A:111 10.0 0.133 H -63.4 -35.4 10.0 0.133 0.0 GSH
HOH
 9.077
4.585
 CA
CA
 SG2
O
GLY B:112 B:111 11.0 0.147 H -60.6 -34.6 11.0 0.147 0.0 GSH
HOH
 9.161
4.002
 CA
CA
 SG2
O
GLY C:112 C:111 11.0 0.147 H -60.8 -33.9 NA NA NA
GLY D:112 D:111 9.0 0.12 H -61.2 -35.2 NA NA NA
1xwk 1 P09488 100.0 3e-164 X-RAY
 2004-12-21 GLY A:112 A:111 9.0 0.12 H -50.7 -43.5 9.0 0.12 0.0 GDN
HOH
 3.221
4.132
 O
C
 O4B
O
GLY B:112 B:111 10.0 0.133 H -50.8 -50.5 NA NA NA
GLY C:112 C:111 7.0 0.093 H -53.3 -42.2 7.0 0.093 0.0 GDN
HOH
 2.956
4.046
 O
C
 O4B
O
1yj6 1 P09488 100.0 3e-164 X-RAY
 2005-02-01 GLY A:112 A:111 10.0 0.133 H -56.2 -28.5 10.0 0.133 0.0 ZN
GSH
HOH
 7.396
9.150
6.338
 CA
CA
CA
 ZN
SG2
O
GLY B:112 B:111 10.0 0.133 H -55.7 -31.2 10.0 0.133 0.0 ZN
GSH
HOH
 7.298
8.881
4.435
 CA
CA
O
 ZN
SG2
O
GLY C:112 C:111 9.0 0.12 H -57.9 -34.3 NA NA NA
2f3m 1 P09488 100.0 3e-164 X-RAY
 2006-04-25 GLY A:112 A:111 9.0 0.12 H -62.3 -21.9 9.0 0.12 0.0 GTD
HOH
 4.129
5.694
 O
O
 O42
O
GLY B:112 B:111 9.0 0.12 H -62.7 -22.3 9.0 0.12 0.0 GTD
HOH
 3.993
6.575
 CA
N
 O41
O
GLY C:112 C:111 9.0 0.12 H -62.5 -22.3 NA NA NA
GLY D:112 D:111 7.0 0.093 H -65.4 -20.7 NA NA NA
GLY E:112 E:111 10.0 0.133 H -64.4 -21.3 NA NA NA
GLY F:112 F:111 11.0 0.147 H -63.8 -21.7 NA NA NA
7beu 1 P09488 100.0 3e-164 X-RAY
 2022-01-12 GLY A:112 A:111 9.0 0.12 H -58.0 -40.2 9.0 0.12 0.0 HOH
 4.628
 O
 O
GLY B:112 B:111 9.0 0.12 H -63.2 -32.3 NA NA NA
GLY C:112 C:111 9.0 0.12 H -63.1 -41.2 NA NA NA
GLY D:112 D:111 10.0 0.133 H -57.5 -38.7 10.0 0.133 0.0 HOH
 4.894
 CA
 O
1gtu 1 P09488 100.0 2e-163 X-RAY
 1999-02-02 GLY A:111 A:111 12.0 0.16 H -50.2 -40.1 12.0 0.16 0.0 HOH
 5.452
 CA
 O
GLY B:111 B:111 9.0 0.12 H -54.4 -46.2 9.0 0.12 0.0 HOH
 7.297
 CA
 O
GLY C:111 C:111 11.0 0.147 H -55.3 -43.6 NA NA NA
GLY D:111 D:111 10.0 0.133 H -49.6 -47.3 NA NA NA
4gtu 1 Q03013 87.04 3e-144 X-RAY
 2000-01-14 ALA A:111 A:111 13.0 0.113 H -66.7 -24.1 13.0 0.113 0.0
ALA B:111 B:111 18.0 0.157 H -64.1 -48.2 18.0 0.157 0.0
ALA C:111 C:111 17.0 0.148 H -55.3 -28.5 NA NA NA
ALA D:111 D:111 16.0 0.139 H -60.6 -45.8 NA NA NA
ALA E:111 E:111 14.0 0.122 H -54.8 -45.7 NA NA NA
ALA F:111 F:111 18.0 0.157 H -56.6 -47.2 NA NA NA
ALA G:111 G:111 29.0 0.252 H -64.0 -33.6 NA NA NA
ALA H:111 H:111 17.0 0.148 H -50.5 -31.9 NA NA NA
2c4j 1 P28161 84.86 3e-141 X-RAY
 2005-10-26 ALA A:112 A:112 21.0 0.183 H -63.6 -42.0 21.0 0.183 0.0 GSO
HOH
 6.180
3.869
 CB
N
 C22
O
ALA B:112 B:112 14.0 0.122 H -60.8 -42.6 14.0 0.122 0.0 GSO
HOH
 6.371
3.868
 CB
N
 OF2
O
ALA C:112 C:112 24.0 0.209 H -55.7 -48.9 NA NA NA
ALA D:112 D:112 14.0 0.122 H -63.2 -45.0 NA NA NA
1xw5 1 P28161 84.33 6e-140 X-RAY
 2004-11-30 ALA A:111 A:111 25.0 0.217 H -64.2 -37.6 25.0 0.217 0.0 GSH
HOH
 8.460
3.968
 CB
N
 SG2
O
ALA B:111 B:111 23.0 0.2 H -61.1 -46.5 23.0 0.2 0.0 GSH
HOH
 8.650
3.460
 CB
CB
 SG2
O
1ykc 1 P28161 84.33 6e-140 X-RAY
 2005-01-25 ALA A:111 A:111 25.0 0.217 H -61.1 -45.6 25.0 0.217 0.0 GDS
HOH
 3.104
3.913
 CB
N
 O1
O
ALA B:111 B:111 23.0 0.2 H -59.5 -45.9 23.0 0.2 0.0 GDS
HOH
 3.329
3.947
 CB
CB
 O1
O
2ab6 1 P28161 84.33 6e-140 X-RAY
 2005-08-02 ALA A:111 A:111 24.0 0.209 H -62.2 -45.2 24.0 0.209 0.0 GSM
HOH
 7.280
5.403
 CB
CB
 C4
O
ALA B:111 B:111 25.0 0.217 H -68.5 -44.3 25.0 0.217 0.0 GSM
HOH
 7.308
3.450
 CB
O
 C4
O
ALA C:111 C:111 25.0 0.217 H -68.4 -42.9 NA NA NA
ALA D:111 D:111 25.0 0.217 H -67.9 -43.8 NA NA NA
2gtu 1 P28161 84.33 6e-140 X-RAY
 1999-03-02 ALA A:111 A:111 14.0 0.122 H -59.0 -46.1 14.0 0.122 0.0 HOH
 3.989
 N
 O
ALA B:111 B:111 17.0 0.148 H -54.7 -47.4 17.0 0.148 0.0 HOH
 4.267
 N
 O
3gtu 1 P28161 84.33 6e-140 X-RAY
 1999-07-29 ALA A:111 A:111 15.0 0.13 H -51.5 -58.9 15.0 0.13 0.0 HOH
 4.710
 C
 O
ALA C:111 C:111 14.0 0.122 H -53.6 -55.0 NA NA NA
3gur 1 P28161 84.33 6e-140 X-RAY
 2009-10-27 ALA A:111 A:111 23.0 0.2 H -66.4 -46.1 23.0 0.2 0.0 BYG
HOH
 3.621
9.205
 CB
N
 OA4
O
ALA B:111 B:111 22.0 0.191 H -68.0 -46.1 22.0 0.191 0.0 GSH
HOH
 8.480
4.092
 CB
N
 SG2
O
ALA C:111 C:111 24.0 0.209 H -65.7 -37.7 NA NA NA
ALA D:111 D:111 24.0 0.209 H -60.1 -45.2 NA NA NA
5hwl 1 P28161 84.33 6e-140 X-RAY
 2017-11-08 ALA A:111 A:111 19.0 0.165 H -60.4 -42.8 19.0 0.165 0.0 GSH
NNE
HOH
 8.504
4.378
4.101
 CB
CB
N
 SG2
CL4
O
ALA B:111 B:111 21.0 0.183 H -61.8 -43.0 21.0 0.183 0.0 GSH
NNE
HOH
 8.331
4.088
6.279
 CB
CB
C
 SG2
CL1
O
1hna 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ALA A:111 A:111 16.0 0.139 H -55.4 -36.2 16.0 0.139 0.0 GDN
HOH
 7.268
4.068
 CB
CB
 SG2
O
1hnb 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ALA A:111 A:111 34.0 0.296 H -57.8 -33.0 34.0 0.296 0.0 GDN
 6.941
 CB
 SG2
ALA B:111 B:111 10.0 0.087 H -54.1 -39.9 10.0 0.087 0.0 GDN
 6.187
 CB
 SG2
1hnc 1 P28161 83.87 1e-138 X-RAY
 1994-01-31 ALA A:111 A:111 54.0 0.47 H -50.2 -48.8 54.0 0.47 0.0 GDN
 7.596
 CB
 SG2
ALA B:111 B:111 20.0 0.174 H -55.9 -58.9 20.0 0.174 0.0 GDN
 5.386
 CB
 SG2
ALA C:111 C:111 29.0 0.252 H -55.9 -44.3 NA NA NA
ALA D:111 D:111 24.0 0.209 H -53.9 -38.1 NA NA NA
2dc5 1 30354091 81.57 6e-137 X-RAY
 2006-06-28 ALA A:119 A:119 11.0 0.096 H -58.8 -49.1 11.0 0.096 0.0 HOH
 3.857
 N
 O
ALA B:119 B:119 12.0 0.104 H -59.9 -47.5 12.0 0.104 0.0 HOH
 3.679
 N
 O
1b4p 1 P08010 80.65 6e-136 X-RAY
 2003-07-08 ALA A:111 A:111 17.0 0.148 H -64.1 -40.6 17.0 0.148 0.0 GPS
HOH
 4.337
3.947
 CB
N
 CD4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09488-f1 1 P09488 100.0 1e-164 GLY A:112 A:112 11.0 0.147 H -54.4 -49.1
af-q03013-f1 1 Q03013 86.7 3e-145 ALA A:112 A:112 17.0 0.148 H -57.4 -45.3
af-p46439-f1 1 P46439 87.61 6e-142 VAL A:112 A:112 27.0 0.174 H -56.8 -50.4
af-p28161-f1 1 P28161 84.4 3e-141 ALA A:112 A:112 15.0 0.13 H -60.6 -47.3